YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|24196414, gi|...
Organism: Leptospira interrogans serovar Lai str. 56601
Length: 354 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24196414, gi|....

Description E-value Query
Range
Subject
Range
gi|52007886, gi|... - gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25...
237.0 [0..1] [354..1]

Back

Predicted Domain #1
Region A:
Residues: [1-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEGSLSQEE IDALLAGASD SFDPGTVAPA ATQKEVPGMS PVDRDILSDL LASCFQVAGN  60
   61 TLGAVLSRSS AFLNPNVETK TRKDIESELK SGSFLLYSTL SGSVNGRVVL AMSAENAVKI 120
  121 SNSMMGGFDS GELDEAQMQT LRDSLTPVMG ALISQISTKT GGGVNGSPSE TRNVTSPAAL 180
  181 VLPDGETLIR VFFNLTIENI PSFRVQFLLS LSTASDLLNL YRRSGSAGGD MSGMGMGGMG 240
  241 GMGMAP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.522879
Match: 2hp7A
Description: No description for 2hp7A was found.

Predicted Domain #2
Region A:
Residues: [247-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSMSVKSVAF PNLGTASGAS NTPNLNLLMD VQMSVTVELG RTKMYIKDIL GLGEGSIIEL  60
   61 DKLAGEPVDL LVNGKLIAKG EVVVIDENFG VRVTDIVSPI DRIKPEGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.522879
Match: 1o6aA
Description: Crystal structure of the c-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
motor activity 3.07201707618408 bayes_pls_golite062009
nucleoside-triphosphatase activity 1.17271522721174 bayes_pls_golite062009
pyrophosphatase activity 1.12849207458848 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 1.10878539079436 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.10781034885807 bayes_pls_golite062009
binding 0.851616221377121 bayes_pls_golite062009
hydrolase activity 0.325371951256 bayes_pls_golite062009
protein binding 0.253452523212299 bayes_pls_golite062009
catalytic activity 0.145477743192426 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle