YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985000, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985000, gi|....

Description	E-value	Query Range	Subject Range
gi\|15023628, gi\|... - gi\|15894032\|ref\|NP_347381.1\| LysR family transcriptional regulator [Clostridium acetobutylicum ATCC ... gi\|25499706 - pir\|\|F96991 transcription regulator, LysR family [imported] - Clostridium acetobutylicum	132.0	[0..24]	[253..1]
gi\|90327975, gi\|... - gi\|90411129\|ref\|ZP_01219142.1\| transcriptional regulator, LysR family protein [Photobacterium profun...	131.0	[0..31]	[235..9]
gi\|32033547 - gi\|32033547\|ref\|ZP_00133874.1\| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae s... gi\|126097176, gi... - gi\|126208384\|ref\|YP_001053609.1\| putative transcriptional regulator [Actinobacillus pleuropneumoniae...	131.0	[0..21]	[224..2]
gi\|113525475, gi... - gi\|113866699\|ref\|YP_725188.1\| transcriptional repressor-molybdenum-binding protein [Ralstonia eutrop...	130.0	[0..8]	[268..2]
gi\|116253171, gi... - gi\|116253171\|ref\|YP_769009.1\| LysR family transcriptional regulator [Rhizobium leguminosarum bv. vic...	130.0	[0..18]	[223..2]
gi\|37200667, gi\|... - gi\|37676126\|ref\|NP_936522.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200667\|dbj\|BA...	129.0	[0..28]	[230..7]
gi\|27367995, gi\|... - gi\|27367995\|ref\|NP_763522.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359568\|gb\|AAO...	129.0	[0..28]	[230..7]
gi\|190892727, gi... - gi\|190892727\|ref\|YP_001979269.1\| probable transcriptional regulator protein, LysR family [Rhizobium ... gi\|86282680, gi\|... - gi\|86358578\|ref\|YP_470470.1\| LysR family transcriptional regulator [Rhizobium etli CFN 42], gi\|86282...	128.0	[0..23]	[223..2]
gi\|71907109, gi\|... - gi\|71907109\|ref\|YP_284696.1\| molybdenum-binding protein, N-terminal:molybdenum-pterin binding protei...	127.0	[0..9]	[266..7]
gi\|541291 - gi\|541291\|pir\|\|F36914 molybdate-binding protein homolog MopA - Rhodobacter capsulatus	127.0	[0..10]	[268..6]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCSGHDMEV AGTLWLHKAD RKFLGSDRIG LLEKIGEYGS ITKAAKAVGV SYKTAWDMVN  60
   61 HLNNMADRPL VERTAGGKGG GGTRLTQAGT ELIEQFSIIQ EEHRRFLDSI SERLVNGDSL 120
  121 YTFLRRIAMK VSARNVFLGT VSGITKGAVN AEVSLTLKGG TPVTAVVTNA SIDSLGLAVG 180
  181 KDAYAIVKAS SIIIGTDLHD AKVSARNIMC GTIVKVIEGP VSTEVDVEIG AGNTISAVIT 240
  241 HESAVRLGLK EGGHACALFK ASSVILGVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1b9mA
Description:	N-terminal domain of molybdate-dependent transcriptional regulator ModE; C-terminal domain of molybdate-dependent transcriptional regulator ModE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
molybdenum ion binding	2.306486700841	bayes_pls_golite062009
transcription regulator activity	1.3574186068153	bayes_pls_golite062009
nucleic acid binding	1.03033432349652	bayes_pls_golite062009
DNA binding	0.926753986189559	bayes_pls_golite062009
binding	0.731921702708422	bayes_pls_golite062009
transcription factor activity	0.638085164477305	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
transporter activity	0.437297481147526	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: