YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997914, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997914, gi|....

Description	E-value	Query Range	Subject Range
gi\|7245830, gi\|6... - gi\|7245831\|pdb\|1DE0\|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s] Cluster Of The Nitr...	250.0	[0..1]	[287..2]
gi\|29650461\|gb\|A... - dinitrogenase reductase [Klebsiella pneumoniae] gi\|29650461 - gi\|29650461\|gb\|AAO85881.1\| dinitrogenase reductase [Klebsiella pneumoniae]	249.0	[0..1]	[289..3]
NIFH1_AZOVI - Nitrogenase iron protein 1 OS=Azotobacter vinelandii GN=nifH1 PE=1 SV=2 gi\|67086894, gi\|... - gi\|67155950\|ref\|ZP_00417577.1\| Nitrogenase iron protein [Azotobacter vinelandii AvOP], gi\|67086894\|g...	249.0	[0..1]	[287..3]
gi\|60359785 - gi\|60359785\|dbj\|BAD90116.1\| dinitrogenase reductase [Pseudomonas azotifigens]	249.0	[0..1]	[288..3]
gi\|476461 - pir\|\|JN0516 nitrogenase (EC 1.18.6.1) 1 iron protein - Azotobacter chroococcum NIFH1_AZOCH - Nitrogenase iron protein 1 OS=Azotobacter chroococcum mcd 1 GN=nifH1 PE=3 SV=2	248.0	[0..1]	[289..3]
NIFH_ALCFA - Nitrogenase iron protein OS=Alcaligenes faecalis GN=nifH PE=3 SV=1	248.0	[0..1]	[288..3]
gi\|62122621 - gi\|62122621\|dbj\|BAD93282.1\| Fe protein of nitrogenase [Halorhodospira halophila]	248.0	[0..1]	[287..1]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQVAIYGKG GIGKSTTTQN TVAGLATLGK KVMIVGCDPK ADSTRLILHA KAQDTVMDLV  60
   61 RDMGTVEDLE LEDVLKVGFK DIKCVESGGP EPGVGCAGRG VITAINFLEE NGAYTPDLDF 120
  121 VFYDVLGDVV CGGFAMPIRE NKAEEIYIVC SGEMMAMYAA NNISKGILKY SSSGKVRLGG 180
  181 LICNSRNTDR EADLIEALAA KLGTQMIHFV PRDNQVQRAE LRRMTVIEYS PEHKQAQEYL 240
  241 TLAQKIIDNK MLVVPTPLEM EELEDLLMEF GIIEAEDESI VGVAEVAAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.39794
Match:	1de0A
Description:	Nitrogenase iron protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nitrogenase activity	7.64446122254294	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor	7.64446122254294	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors	6.02214463894762	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.546796591575762	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.543610140926125	bayes_pls_golite062009
pyrophosphatase activity	0.540750418412449	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.517457589081898	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: