YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996583, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996583, gi|....

Description	E-value	Query Range	Subject Range
gi\|98662526 - gi\|98662526\|dbj\|GAA00614.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	119.0	[0..3]	[138..5]
gi\|88924688, gi\|... - gi\|88945717\|ref\|ZP_01148883.1\| regulatory protein, MarR [Desulfotomaculum reducens MI-1], gi\|8892468...	117.0	[0..1]	[138..14]
gi\|86554954, gi\|... - gi\|86606412\|ref\|YP_475175.1\| MarR family transcriptional regulator [Synechococcus sp. JA-3-3Ab], gi\|... gi\|86606412 - gi\|86606412\|ref\|YP_475175.1\| transcriptional regulator, MarR family [Cyanobacteria bacterium Yellows...	114.0	[0..8]	[139..10]
gi\|46913675, gi\|... - gi\|54309243\|ref\|YP_130263.1\| transcriptional regulator [Photobacterium profundum SS9], gi\|46913675\|e...	113.0	[0..2]	[140..5]
gi\|148263202, gi... - gi\|88936557\|ref\|ZP_01142163.1\| regulatory protein, MarR [Geobacter uraniumreducens Rf4], gi\|88916686...	113.0	[0..4]	[145..5]
gi\|106894170, gi... - gi\|158319886\|ref\|YP_001512393.1\| MarR family transcriptional regulator [Alkaliphilus oremlandii OhIL...	112.0	[0..3]	[137..2]
gi\|87308952, gi\|... - gi\|87308952\|ref\|ZP_01091090.1\| transcriptional regulator, MarR family protein [Blastopirellula marin...	112.0	[0..2]	[141..4]
gi\|114336769, gi... - gi\|71542329\|ref\|ZP_00663967.1\| regulatory protein, MarR [Syntrophomonas wolfei str. Goettingen], gi\|...	112.0	[0..3]	[135..2]
gi\|90328675, gi\|... - gi\|90410434\|ref\|ZP_01218450.1\| transcriptional regulator [Photobacterium profundum 3TCK], gi\|9032867...	112.0	[0..2]	[140..5]
gi\|86608676 - gi\|86608676\|ref\|YP_477438.1\| transcriptional regulator, MarR family [Cyanobacteria bacterium Yellows... gi\|86608676, gi\|... - gi\|86608676\|ref\|YP_477438.1\| MarR family transcriptional regulator [Synechococcus sp. JA-2-3B'a(2-13...	112.0	[0..8]	[139..10]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDIENSIGF HLAKAYQRGF ALFKDQLDPY GLTPPQFSVL AFLWKEDGQS QTALSQKTLI  60
   61 DRTTIGGLVD RLEKLGLVKR QPHPEDRRAY RICLTQRGMT LEHELCATAA EVLARFLAPL 120
  121 SEDEQNSLHH LLEKIRTAPE NRHETTTNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.045757
Match:	2a61A
Description:	The crystal structure of transcriptional regulator Tm0710 from Thermotoga maritima
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: