YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982566, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982566, gi|....

Description	E-value	Query Range	Subject Range
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	287.0	[0..1]	[245..1]
gi\|114805082, gi... - gi\|167040419\|ref\|YP_001663404.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Thermoanaerobacter sp.... gi\|76795516, gi\|... - gi\|76795516\|ref\|ZP_00777889.1\| Short-chain dehydrogenase/reductase SDR [Thermoanaerobacter ethanolic... gi\|242257918, gi... - gi\|242257918\|ref\|ZP_04802763.1\| short-chain dehydrogenase/reductase SDR [Thermoanaerobacter sp. X513... gi\|241883640, gi... - gi\|241903996\|ref\|ZP_04788709.1\| short-chain dehydrogenase/reductase SDR [Thermoanaerobacter brockii ...	281.0	[0..1]	[252..1]
gi\|89098688, gi\|... - gi\|89098688\|ref\|ZP_01171570.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus sp. NRRL B-149...	279.0	[0..1]	[245..1]
gi\|146296617, gi... - gi\|82501013\|ref\|ZP_00886394.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Caldicellulosiruptor sacc...	278.0	[0..3]	[245..4]
gi\|20806601 - ref\|NP_621772.1\| Dehydrogenases with different specificities (related to short-chain alcohol dehydro... gi\|20515045, gi\|... - gi\|20806601\|ref\|NP_621772.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Thermoanaerobacter tengcon...	276.0	[0..1]	[252..1]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	276.0	[0..3]	[245..2]
gi\|255313843 - gi\|255313843\|ref\|ZP_05355426.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255516524 - gi\|255516524\|ref\|ZP_05384200.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255649624 - gi\|255649624\|ref\|ZP_05396526.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|254974717 - gi\|254974717\|ref\|ZP_05271189.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255092105 - gi\|255092105\|ref\|ZP_05321583.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile CI... gi\|90575404, gi\|... - gi\|90575404\|ref\|ZP_01231888.1\| hypothetical protein CdifQ_02001165 [Clostridium difficile QCD-32g58]...	274.0	[0..2]	[248..3]
gi\|115250215, gi... - gi\|126698778\|ref\|YP_001087675.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile 6... gi\|255306086 - gi\|255306086\|ref\|ZP_05350258.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile AT... gi\|255100197 - gi\|255100197\|ref\|ZP_05329174.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC...	274.0	[0..2]	[248..3]
gi\|168210762, gi... - gi\|170711222\|gb\|EDT23404.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens B st... gi\|110675446, gi... - gi\|110800799\|ref\|YP_695772.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens A... gi\|170660709, gi... - gi\|170660709\|gb\|EDT13392.1\| 3-oxoacyl- reductase [Clostridium perfringens E str. JGS1987], gi\|168207...	273.0	[0..3]	[245..2]
gi\|28210515, gi\|... - gi\|28210515\|ref\|NP_781459.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium tetani E88], g...	272.0	[0..3]	[245..6]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLKGKVAVV TGGAQGIGKA VVKKLMEKGC AVVMADTDWE AGEETAAGFA GLGRVLFVPA  60
   61 DVGREDDVRV LVERAASHFG RLDILVCNAG VFRSVPLEHC SLDEWQRLIG TNLTGAFLCA 120
  121 KHAAPFLACH GGSIVTIAST RAFMSEPDTE AYAASKGGLV ALTHALAVSL GPGVRVNCIS 180
  181 PGWIETCEWQ KASRRRPAAH SEEDRSQHPA GRVGTPEDVA SLAAWLVSPE AGFVTGVNFV 240
  241 VDGGMTRKMV YV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.522879
Match:	2p68A
Description:	No description for 2p68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits