YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995674, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995674, gi|....

Description	E-value	Query Range	Subject Range
gi\|67982448, gi\|... - gi\|95930393\|ref\|ZP_01313130.1\| DNA-3-methyladenine glycosylase I [Desulfuromonas acetoxidans DSM 684...	329.0	[0..3]	[186..8]
gi\|85723880, gi\|... - gi\|85860789\|ref\|YP_462991.1\| DNA-3-methyladenine glycosylase [Syntrophus aciditrophicus SB], gi\|8572...	324.0	[0..3]	[190..7]
gi\|77867583, gi\|... - gi\|77953611\|ref\|ZP_00818018.1\| DNA-3-methyladenine glycosylase I [Marinobacter aquaeolei VT8], gi\|77...	320.0	[0..4]	[190..7]
gi\|82745721, gi\|... - gi\|82745721\|ref\|ZP_00908232.1\| DNA-3-methyladenine glycosylase I [Clostridium beijerincki NCIMB 8052...	319.0	[0..1]	[183..4]
gi\|115514957, gi... - gi\|117625833\|ref\|YP_859156.1\| 3-methyl-adenine DNA glycosylase I, constitutive [Escherichia coli APE... gi\|237703317, gi... - gi\|237703317\|ref\|ZP_04533798.1\| DNA-3-methyladenine glycosylase I [Escherichia sp. 3_2_53FAA], gi\|22... gi\|91213062, gi\|... - gi\|91213062\|ref\|YP_543048.1\| DNA-3-methyladenine glycosylase I [Escherichia coli UTI89], gi\|91074636...	318.0	[0..2]	[184..56]
gi\|26110618, gi\|... - gi\|26250189\|ref\|NP_756229.1\| DNA-3-methyladenine glycosylase I [Escherichia coli CFT073], gi\|2611061...	318.0	[0..2]	[184..56]
gi\|191170471, gi... - gi\|75242660\|ref\|ZP_00726404.1\| COG2818: 3-methyladenine DNA glycosylase [Escherichia coli F11], gi\|1... gi\|162138343 - gi\|162138343\|ref\|YP_543048.2\| 3-methyl-adenine DNA glycosylase I [Escherichia coli UTI89] gi\|162317567 - gi\|162317567\|ref\|YP_859156.2\| 3-methyl-adenine DNA glycosylase I [Escherichia coli APEC O1] gi\|218560626, gi... - gi\|218560626\|ref\|YP_002393539.1\| 3-methyl-adenine DNA glycosylase I [Escherichia coli S88], gi\|21836...	317.0	[0..2]	[184..1]
gi\|81247325, gi\|... - gi\|82545914\|ref\|YP_409861.1\| 3-methyl-adenine DNA glycosylase I [Shigella boydii Sb227], gi\|81247325... gi\|218372300, gi... - gi\|218702314\|ref\|YP_002409943.1\| 3-methyl-adenine DNA glycosylase I [Escherichia coli IAI39], gi\|218...	317.0	[0..2]	[184..1]
gi\|88918892, gi\|... - gi\|88934434\|ref\|ZP_01140077.1\| DNA-3-methyladenine glycosylase I [Geobacter uraniumreducens Rf4], gi...	316.0	[0..2]	[191..7]
gi\|83856334, gi\|... - gi\|83856334\|ref\|ZP_00949863.1\| DNA-3-methyladenine glycosidase I [Croceibacter atlanticus HTCC2559],...	316.0	[0..3]	[187..4]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQRCEWCGT DPLYVAYHDG EWGVPAHDDR HLFEMLILEG AQAGLSWLTI LRKREAYRRA  60
   61 FAGFDAETVA AWSEADVARL LADPGIVRNR LKIESTIRNA RGVLKIREEF GSLDAYLWRF 120
  121 VDHAPRHNAW RSLTDIPART EQSDAMSKDL KRRGFNFVGS TICYAFMQAV GMVNDHVVHC 180
  181 FRHDEIRRSG G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.39794
Match:	1lmzA
Description:	3-Methyladenine DNA glycosylase I (Tag)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA N-glycosylase activity	4.08559331236111	bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds	3.73234184319832	bayes_pls_golite062009
DNA-(apurinic or apyrimidinic site) lyase activity	3.12421941323765	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	2.54759386266723	bayes_pls_golite062009
catalytic activity	2.50389926428623	bayes_pls_golite062009
oxidized base lesion DNA N-glycosylase activity	1.80199518353554	bayes_pls_golite062009
alkylbase DNA N-glycosylase activity	1.75218522602775	bayes_pls_golite062009
hydrolase activity	1.39000450534744	bayes_pls_golite062009
DNA-3-methyladenine glycosylase I activity	1.14337995879633	bayes_pls_golite062009
oxidized purine base lesion DNA N-glycosylase activity	0.473206156100251	bayes_pls_golite062009
uracil DNA N-glycosylase activity	0.29478804124408	bayes_pls_golite062009
oxidized pyrimidine base lesion DNA N-glycosylase activity	0.253198605718519	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: