YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982311, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982311, gi|....

Description	E-value	Query Range	Subject Range
gi\|226942951, gi... - gi\|67157818\|ref\|ZP_00418963.1\| Flavoprotein [Azotobacter vinelandii AvOP], gi\|67085087\|gb\|EAM04563.1... gi\|53610053, gi\|... - gi\|67157818\|ref\|ZP_00418963.1\| Flavoprotein [Azotobacter vinelandii AvOP], ref\|ZP_00088579.2\| COG016...	238.0	[0..4]	[206..5]
gi\|49079190 - gi\|49079190\|gb\|AAT49864.1\| PA4019 [synthetic construct]	237.0	[0..1]	[207..1]
PAAD_PSEAE - Probable aromatic acid decarboxylase OS=Pseudomonas aeruginosa GN=PA4019 PE=3 SV=1 gi\|46164624, gi\|... - gi\|46164624\|ref\|ZP_00137461.2\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Pseudomonas ae... UBIX_PSEAE - Flavin prenyltransferase UbiX OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / L... gi\|254242703, gi... - gi\|84325151\|ref\|ZP_00973191.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Pseudomonas ae... gi\|84319239, gi\|... - gi\|84319239\|ref\|ZP_00967640.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Pseudomonas ae... gi\|218889700, gi... - gi\|218889700\|ref\|YP_002438564.1\| aromatic acid decarboxylase [Pseudomonas aeruginosa LESB58], gi\|218... gi\|107103534 - gi\|107103534\|ref\|ZP_01367452.1\| hypothetical protein PaerPA_01004604 [Pseudomonas aeruginosa PACS2]	236.0	[0..1]	[207..1]
gi\|70732771, gi\|... - gi\|70732771\|ref\|YP_262534.1\| aromatic acid decarboxylase [Pseudomonas fluorescens Pf-5], gi\|68347070...	235.0	[0..5]	[207..7]
gi\|77461207, gi\|... - gi\|77461207\|ref\|YP_350714.1\| aromatic acid decarboxylase [Pseudomonas fluorescens Pf0-1], gi\|7738521...	235.0	[0..5]	[207..8]
gi\|34104643, gi\|... - gi\|34498792\|ref\|NP_903007.1\| aromatic acid decarboxylase [Chromobacterium violaceum ATCC 12472], gi\|...	234.0	[0..1]	[201..1]
gi\|149748709, gi... - gi\|153837931\|ref\|ZP_01990598.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative [Vibrio parah... gi\|28805298 - gi\|28805298\|dbj\|BAC58578.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio parahaemolyticus RI... gi\|28897089, gi\|... - gi\|28897089\|ref\|NP_796694.1\| aromatic acid decarboxylase [Vibrio parahaemolyticus RIMD 2210633], gi\|...	233.0	[0..2]	[205..9]
gi\|54307600, gi\|... - gi\|54307600\|ref\|YP_128620.1\| aromatic acid decarboxylase [Photobacterium profundum SS9], gi\|46912023...	233.0	[0..1]	[205..1]
gi\|152985350, gi... - gi\|94417048\|ref\|ZP_01296870.1\| hypothetical protein PaerP_01001244 [Pseudomonas aeruginosa PA7], gi\|...	232.0	[0..1]	[207..1]
gi\|95108881 - gi\|95108881\|emb\|CAK13577.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Pseudomonas entomophila L4... gi\|95108881, gi\|... - gi\|95108881\|emb\|CAK13577.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Pseudomonas entomophila L4...	232.0	[0..1]	[204..1]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRHVVLAI TGASGAVYGL RLGCELLAAG CRLTLLISRP GFTVIREECG LDWGDWPHET  60
   61 LGALEEYFRP APGMLAYYTE DDLMAPVASG SRAPDAMVVC PCSMGSLARI AAGLSSTLTE 120
  121 RCADVTLKEG RPLVLVPRET PLSAIHLENM LKLARLGVRI VPAMPGFYHE PRTVDDLVGF 180
  181 VVGKVLDALQ IPHELFTRWG DVSRVEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.154902
Match:	1sbzA
Description:	Crystal Structure of dodecameric FMN-dependent Ubix-like Decarboxylase from Escherichia coli O157:H7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity	5.88631349530005	bayes_pls_golite062009
carboxy-lyase activity	2.27469953971238	bayes_pls_golite062009
catalytic activity	1.88716391063227	bayes_pls_golite062009
carbon-carbon lyase activity	1.67751595868044	bayes_pls_golite062009
phosphopantothenoylcysteine decarboxylase activity	1.6488492075417	bayes_pls_golite062009
lyase activity	0.646446561158526	bayes_pls_golite062009
phosphopantothenate--cysteine ligase activity	0.35505046579356	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: