YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982094, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982094, gi|....

Description	E-value	Query Range	Subject Range
gi\|71273786 - gi\|71273786\|emb\|CAH56581.1\| cytochrome oxidase subunit II [Saltella sphondylii]	265.0	[0..1]	[186..21]
gi\|71273794 - gi\|71273794\|emb\|CAH56585.1\| cytochrome oxidase subunit II [Themira biloba]	265.0	[0..1]	[186..21]
gi\|11321195 - gi\|11321195\|gb\|AAG34093.1\|AF295552_2 cytochrome oxidase subunit 2 [Chrysomya norrisi]	265.0	[0..1]	[187..21]
gi\|119514259, gi... - gi\|59896102\|gb\|AAX11413.1\| cytochrome oxidase subunit II [Chrysomya rufifacies], gi\|59896099\|gb\|AAX1... gi\|11321204 - gi\|11321204\|gb\|AAG34099.1\|AF295555_2 cytochrome oxidase subunit 2 [Cochliomyia macellaria]	264.0	[0..1]	[187..21]
gi\|59896093 - gi\|59896093\|gb\|AAX11407.1\| cytochrome oxidase subunit II [Chrysomya megacephala]	264.0	[0..1]	[187..21]
gi\|71273808 - gi\|71273808\|emb\|CAH56592.1\| cytochrome oxidase subunit II [Themira putris]	264.0	[0..1]	[186..21]
gi\|11321201 - gi\|11321201\|gb\|AAG34097.1\|AF295554_2 cytochrome oxidase subunit 2 [Chrysomya putoria]	264.0	[0..1]	[187..21]
gi\|71273806 - gi\|71273806\|emb\|CAH56591.1\| cytochrome oxidase subunit II [Themira pusilla] gi\|71273810 - gi\|71273810\|emb\|CAH56593.1\| cytochrome oxidase subunit II [Themira superba] gi\|71273784 - gi\|71273784\|emb\|CAH56580.1\| cytochrome oxidase subunit II [Nemopoda nitidula] gi\|71273792 - gi\|71273792\|emb\|CAH56584.1\| cytochrome oxidase subunit II [Themira arctica] gi\|71273800 - gi\|71273800\|emb\|CAH56588.1\| cytochrome oxidase subunit II [Themira lucida]	264.0	[0..1]	[186..21]
gi\|71273804 - gi\|71273804\|emb\|CAH56590.1\| cytochrome oxidase subunit II [Themira nigricornis]	264.0	[0..1]	[186..21]
gi\|71273790 - gi\|71273790\|emb\|CAH56583.1\| cytochrome oxidase subunit II [Themira annulipes]	264.0	[0..1]	[186..21]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFILGACILL LTGITVVMVA FVIRYHRSRS PEPTSQAATN LWLEIVWTAL PTVLVLAMFY  60
   61 YGWSSYLSLR HVPPGAMEVT AVGRMWSWSF EYPGGRTSPR LYVPVGKPVR VDLVSKDVLH 120
  121 GFYIPAFRVK RDVVPGMKNH VWFVAPKAGS YDIFCSVYCG TGHSAMITTV EAIPDAEFQA 180
  181 WLSHGEEGEK EKEGHGRELL EKHGCLGCHS LDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.09691
Match:	1fftB
Description:	Quinol oxidase (CyoA); Cytochrome O ubiquinol oxidase, subunit II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.910231434235845	bayes_pls_golite062009
receptor activity	0.536491030734287	bayes_pls_golite062009
transmembrane receptor activity	0.416025501184058	bayes_pls_golite062009
protein binding	0.31459442397123	bayes_pls_golite062009
ephrin receptor binding	0.0573211102210707	bayes_pls_golite062009
cation transmembrane transporter activity	0.0444369516438172	bayes_pls_golite062009
receptor binding	0.02789117638033	bayes_pls_golite062009
signal transducer activity	0.0187593755848567	bayes_pls_golite062009
molecular transducer activity	0.0187593755848567	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [214-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPRLGPTFKG IWGHQVTVTE DGVERTLTVD EAYLVRSIRQ PAAQVVKGFP PVMPPYPGLS  60
   61 DEEVEEMVEF IRELK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.30103
Match:	1w2lA
Description:	Cytochrome c domain of caa3 oxygen oxidoreductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: