YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982020, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982020, gi|....

Description	E-value	Query Range	Subject Range
gi\|58582563, gi\|... - gi\|58582563\|ref\|YP_201579.1\| recombination regulator RecX [Xanthomonas oryzae pv. oryzae KACC10331],...	138.0	[0..4]	[159..25]
gi\|161723248 - gi\|161723248\|ref\|YP_095826.2\| recombination regulator RecX [Legionella pneumophila subsp. pneumophil... RECX_LEGPN - Regulatory protein RecX OS=Legionella pneumophila GN=recX PE=3 SV=2 RECX_LEGPC - Regulatory protein RecX OS=Legionella pneumophila (strain Corby) GN=recX PE=3 SV=1 RECX_LEGPA - Regulatory protein RecX OS=Legionella pneumophila (strain Paris) GN=recX PE=3 SV=1	137.0	[0..10]	[156..3]
RECX_VIBVY - Regulatory protein RecX OS=Vibrio vulnificus (strain YJ016) GN=recX PE=3 SV=1	136.0	[0..11]	[154..12]
RECX_HAEIN - Regulatory protein RecX OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rec... RECX_HAEIN - Regulatory protein recX OS=Haemophilus influenzae GN=recX PE=3 SV=2	136.0	[0..11]	[147..5]
gi\|46128815 - gi\|46128815\|ref\|ZP_00201941.1\| COG2137: Uncharacterized protein conserved in bacteria [Haemophilus i... RECX_HAEIE - Regulatory protein RecX OS=Haemophilus influenzae (strain PittEE) GN=recX PE=3 SV=1 gi\|229809554, gi... - gi\|229847528\|ref\|ZP_04467621.1\| recombination regulator RecX [Haemophilus influenzae 7P49H1], gi\|229...	136.0	[0..11]	[147..5]
RECX_LEGPL - Regulatory protein RecX OS=Legionella pneumophila (strain Lens) GN=recX PE=3 SV=1	135.0	[0..10]	[156..3]
RECX_VIBVU - Regulatory protein recX OS=Vibrio vulnificus GN=recX PE=3 SV=1 RECX_VIBVU - Regulatory protein RecX OS=Vibrio vulnificus (strain CMCP6) GN=recX PE=3 SV=1	135.0	[0..10]	[157..11]
RECX_LACLA - Regulatory protein recX OS=Lactococcus lactis subsp. lactis GN=recX PE=3 SV=1 RECX_LACLA - Regulatory protein RecX OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=recX PE=3 SV=1	135.0	[0..5]	[159..56]
gi\|91227830, gi\|... - gi\|91227830\|ref\|ZP_01262003.1\| RecA regulator RecX [Vibrio alginolyticus 12G01], gi\|91188340\|gb\|EAS7...	134.0	[0..12]	[159..44]
gi\|28378009, gi\|... - gi\|28378009\|ref\|NP_784901.1\| recombination regulator RecX [Lactobacillus plantarum WCFS1], gi\|282708... RECX_LACPL - Regulatory protein recX OS=Lactobacillus plantarum GN=recX PE=3 SV=1	134.0	[0..5]	[159..58]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSRPERRRD PLSTALDILS RRDHSEAELA RKLRSRGIDA GEIDRIVARL REFGYLNDRR  60
   61 VACRLAESAL AQGKMVGARL RVELRRRGIP PELAEEALAQ AAAGCDERAL VGDLLARKFP 120
  121 GFDPAVADPR EKRRVVGWFQ RRGFGLSAIL EALRCPVDE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	1okrA
Description:	Three-dimensional structure of S.aureus methicillin-resistance regulating transcriptional repressor MecI.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.4175884856209	bayes_pls_golite062009
DNA binding	2.94088153273597	bayes_pls_golite062009
nucleic acid binding	2.79933235175398	bayes_pls_golite062009
transcription factor activity	2.3070929088217	bayes_pls_golite062009
binding	2.03697617454396	bayes_pls_golite062009
sequence-specific DNA binding	0.266645609122554	bayes_pls_golite062009
transcription repressor activity	0.225337140748148	bayes_pls_golite062009
transcription activator activity	0.212739360527878	bayes_pls_golite062009
protein binding	0.00796693091603284	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: