YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39981971, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39981971, gi|....

Description	E-value	Query Range	Subject Range
gi\|78195863, gi\|... - gi\|78224608\|ref\|YP_386355.1\| roadblock/LC7 domain-contain protein [Geobacter metallireducens GS-15],...	251.0	[0..1]	[163..1]
gi\|221562771, gi... - gi\|222053482\|ref\|YP_002535844.1\| Roadblock/LC7 family protein [Geobacter sp. FRC-32], gi\|221562771\|g...	240.0	[0..1]	[163..1]
gi\|88917583, gi\|... - gi\|88935687\|ref\|ZP_01141315.1\| MglB protein [Geobacter uraniumreducens Rf4], gi\|88917583\|gb\|EAR36774...	240.0	[0..1]	[163..1]
gi\|148250134 - gi\|148250134\|gb\|ABQ53161.1\| MglB [Myxococcus fulvus] gi\|14150848 - gi\|14150848\|gb\|AAA25388.2\| MglB [Myxococcus xanthus] gi\|108466234, gi... - gi\|108762354\|ref\|YP_630170.1\| gliding motility protein MglB [Myxococcus xanthus DK 1622], gi\|1084662...	231.0	[0..5]	[163..4]
gi\|115374597, gi... - gi\|115374597\|ref\|ZP_01461876.1\| MglB [Stigmatella aurantiaca DW4/3-1], gi\|115368363\|gb\|EAU67319.1\| M...	225.0	[0..8]	[163..1]
gi\|71838947, gi\|... - gi\|71838947\|ref\|ZP_00678702.1\| Roadblock/LC7 family [Pelobacter propionicus DSM 2379], gi\|71740534\|g...	223.0	[0..1]	[163..1]
gi\|94525, gi\|291... - pir\|\|A32048 hypothetical protein (mglA 5' region) - Myxococcus xanthus, gi\|29169126\|gb\|AAO66303.1\| m...	220.0	[0..5]	[163..4]
gi\|163847618, gi... - gi\|76258824\|ref\|ZP_00766477.1\| Roadblock/LC7 [Chloroflexus aurantiacus J-10-fl], gi\|76166206\|gb\|EAO6... gi\|53797352 - ref\|ZP_00358176.1\| COG2018: Uncharacterized distant relative of homeotic protein bithoraxoid [Chloro... gi\|222525474, gi... - gi\|222525474\|ref\|YP_002569945.1\| Roadblock/LC7 family protein [Chloroflexus sp. Y-400-fl], gi\|222449...	215.0	[0..5]	[162..7]
gi\|38640505 - gi\|38640505\|gb\|AAR25889.1\| putative GTP release factor [Polyangium cellulosum]	209.0	[0..1]	[163..1]
gi\|86160052, gi\|... - gi\|86160052\|ref\|YP_466837.1\| mutual gliding protein B [Anaeromyxobacter dehalogenans 2CP-C], gi\|8577... gi\|196173931, gi... - gi\|197124082\|ref\|YP_002136033.1\| Roadblock/LC7 family protein [Anaeromyxobacter sp. K], gi\|196173931... gi\|220918861, gi... - gi\|220918861\|ref\|YP_002494165.1\| Roadblock/LC7 family protein [Anaeromyxobacter dehalogenans 2CP-1],...	206.0	[0..6]	[163..5]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYPQMVMYD EEFKLINAVI EKLLREANAK VIFLVDKNGQ LISGVGETER FDTTSLASLT  60
   61 AGNIAATGGL AKLIGEKEFS ILFHEGEKDN LHISIVGGRV ILVVLFDNRS SLGLVRLRVK 120
  121 KASDELTTVF DRLMKKAEEK ERSGIQEFPF AEITDDDIDN LFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.154902
Match:	1j3wA
Description:	Structure of Gliding protein-mglB from Thermus Thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	0.55721186779824	bayes_pls_golite062009
pyrophosphatase activity	0.52387867850452	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.51517702965807	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.51457820169236	bayes_pls_golite062009
binding	0.356155233055164	bayes_pls_golite062009
catalytic activity	0.242477537534574	bayes_pls_golite062009
ATPase activity, coupled	0.19841334731232	bayes_pls_golite062009
ATPase activity	0.09609915373894	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: