YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995185, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995185, gi|....

Description	E-value	Query Range	Subject Range
gi\|84317886 - gi\|84317886\|ref\|ZP_00966321.1\| COG3155: Uncharacterized protein involved in an early stage of isopre... gi\|107104347 - gi\|107104347\|ref\|ZP_01368265.1\| hypothetical protein PaerPA_01005422 [Pseudomonas aeruginosa PACS2] gi\|53726706 - gi\|53726706\|ref\|ZP_00347670.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	179.0	[0..2]	[216..41]
gi\|84324051 - gi\|84324051\|ref\|ZP_00972116.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	179.0	[0..2]	[216..41]
gi\|227835326, gi... - gi\|227887930\|ref\|ZP_04005735.1\| isoprenoid biosynthesis protein [Escherichia coli 83972], gi\|2278353... gi\|26249795, gi\|... - gi\|26249795\|ref\|NP_755835.1\| isoprenoid biosynthesis protein [Escherichia coli CFT073], gi\|26110223\|... gi\|191174422, gi... - gi\|75236488\|ref\|ZP_00720583.1\| COG3155: Uncharacterized protein involved in an early stage of isopre... gi\|110643450, gi... - gi\|110643450\|ref\|YP_671180.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [Esc...	179.0	[0..1]	[217..1]
gi\|91074208, gi\|... - gi\|91212634\|ref\|YP_542620.1\| isoprenoid biosynthesis protein [Escherichia coli UTI89], gi\|91074208\|g... gi\|117625501, gi... - gi\|117625501\|ref\|YP_858824.1\| isoprenoid biosynthesis protein [Escherichia coli APEC O1], gi\|1155146... gi\|237706039, gi... - gi\|237706039\|ref\|ZP_04536520.1\| isoprenoid biosynthesis protein [Escherichia sp. 3_2_53FAA], gi\|2268...	178.0	[0..1]	[217..1]
gi\|7449877, gi\|6... - gi\|7449877\|pir\|\|C65112 sigma cross-reacting protein 27A - Escherichia coli (strain K-12), gi\|606148\|... gi\|24114497, gi\|... - ref\|NP_709007.1\| sigma cross-reacting protein 27A (SCRP-27A) [Shigella flexneri 2a str. 301], gb\|AA... gi\|254038374, gi... - gi\|254038374\|ref\|ZP_04872432.1\| sigma cross-reacting protein 27A [Escherichia sp. 1_1_43], gi\|226839... gi\|16131099, gi\|... - gb\|AAC76241.1\| sigma cross-reacting protein 27A (SCRP-27A) [Escherichia coli K12], gi\|16131099\|ref\|... gi\|606148\|gb\|AAA... - sigma cross-reacting protein 27A [Escherichia coli]	178.0	[0..1]	[217..4]
gi\|218701978, gi... - gi\|218701978\|ref\|YP_002409607.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|217326892, gi... - gi\|217326892\|ref\|ZP_03442975.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 ... gi\|209398524, gi... - gi\|209398524\|ref\|YP_002272679.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7... gi\|208741366, gi... - gi\|208821243\|ref\|ZP_03261563.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 ... gi\|208811932, gi... - gi\|208811932\|ref\|ZP_03253261.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 ... gi\|208729483, gi... - gi\|208809682\|ref\|ZP_03252019.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 ... gi\|195940065 - gi\|195940065\|ref\|ZP_03085447.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [E... gi\|168800923, gi... - gi\|189376857\|gb\|EDU95273.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|189374165, gi... - gi\|189374165\|gb\|EDU92581.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|38704149 - gi\|38704149\|ref\|NP_312115.2\| isoprenoid biosynthesis protein with amidotransferase-like domain [Esch... gi\|189001114, gi... - gi\|189001114\|gb\|EDU70100.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|187767461, gi... - gi\|187767461\|gb\|EDU31305.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|189361850, gi... - gi\|189361850\|gb\|EDU80269.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|189366141, gi... - gi\|189366141\|gb\|EDU84557.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|254795158, gi... - gi\|254795158\|ref\|YP_003079995.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|189358772, gi... - gi\|189358772\|gb\|EDU77191.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|188014364, gi... - gi\|188014364\|gb\|EDU52486.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|38704149 - gi\|38704149\|ref\|NP_312115.2\| sigma cross-reacting protein 27A [Escherichia coli O157:H7]	178.0	[0..1]	[217..1]
ELBB_SHIFL - Glyoxalase ElbB OS=Shigella flexneri GN=elbB PE=3 SV=1 gi\|75197158, gi\|... - gi\|75197158\|ref\|ZP_00707228.1\| COG3155: Uncharacterized protein involved in an early stage of isopre... gi\|30064546, gi\|... - gi\|30064546\|ref\|NP_838717.1\| isoprenoid biosynthesis protein [Shigella flexneri 2a str. 2457T], gi\|3... gi\|75511888, gi\|... - gi\|75511888\|ref\|ZP_00734500.1\| COG3155: Uncharacterized protein involved in an early stage of isopre... gi\|169753469, gi... - gi\|170018541\|ref\|YP_001723495.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... EG11383 - isoprenoid biosynthesis protein with amidotransferase-like domain / Involved in isoprenoid biosynthe... EG11383 - isoprenoid biosynthesis protein with amidotransferase-like domain / Involved in isoprenoid biosynthe... gi\|170082743, gi... - gi\|170082743\|ref\|YP_001732063.1\| isoprenoid biosynthesis protein [Escherichia coli str. K-12 substr.... gi\|85676003, gi\|... - gi\|89109972\|ref\|AP_003752.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [Esch... gi\|194434485, gi... - gi\|194434485\|ref\|ZP_03066745.1\| enhancing lycopene biosynthesis protein 2 [Shigella dysenteriae 1012... gi\|56383838, gi\|... - gi\|56480287\|ref\|NP_709007.2\| isoprenoid biosynthesis protein [Shigella flexneri 2a str. 301], gi\|563... gi\|124500512, gi... - gi\|124528489\|ref\|ZP_01699778.1\| ThiJ/PfpI domain protein [Escherichia coli B], gi\|124500512\|gb\|EAY47... gi\|218706829, gi... - gi\|218706829\|ref\|YP_002414348.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|110807074, gi... - gi\|110807074\|ref\|YP_690594.1\| isoprenoid biosynthesis protein [Shigella flexneri 5 str. 8401], gi\|11... gi\|194439166, gi... - gi\|83585413\|ref\|ZP_00924059.1\| COG3155: Uncharacterized protein involved in an early stage of isopre... gi\|253975052, gi... - gi\|254163151\|ref\|YP_003046259.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|253323001, gi... - gi\|254289901\|ref\|YP_003055649.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|242378752, gi... - gi\|251786479\|ref\|YP_003000783.1\| hypothetical protein B21_03025 [Escherichia coli BL21], gi\|24237875... gi\|238902311, gi... - gi\|238902311\|ref\|YP_002928107.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... ELBB_ECOLI - Enhancing lycopene biosynthesis protein 2 (Sigma cross-reacting protein 27A) (SCRP-27A) - Escherichi...	178.0	[0..1]	[217..1]
gi\|209757956, gi... - pir\|\|C85985 sigma cross-reacting protein 27A (SCRP-27A) [imported] - Escherichia coli (strain O157:H... gi\|15803749, gi\|... - gi\|15803749\|ref\|NP_289783.1\| isoprenoid biosynthesis protein [Escherichia coli O157:H7 EDL933], gi\|1... gi\|13363561 - gi\|13363561\|dbj\|BAB37511.1\| sigma cross-reacting protein 27A [Escherichia coli O157:H7] gi\|13363561 - gi\|13363561\|dbj\|BAB37511.1\| sigma cross-reacting protein 27A [Escherichia coli O157:H7 str. Sakai]	177.0	[0..1]	[217..4]
gi\|74313746, gi\|... - gi\|74313746\|ref\|YP_312165.1\| isoprenoid biosynthesis protein [Shigella sonnei Ss046], gi\|73857223\|gb... gi\|81246965, gi\|... - gi\|82545554\|ref\|YP_409501.1\| isoprenoid biosynthesis protein [Shigella boydii Sb227], gi\|81246965\|gb...	177.0	[0..1]	[217..4]
gi\|67155425 - gi\|67155425\|ref\|ZP_00417053.1\| ThiJ/PfpI [Azotobacter vinelandii AvOP] gi\|67155425, gi\|... - gi\|67155425\|ref\|ZP_00417053.1\| ThiJ/PfpI [Azotobacter vinelandii AvOP], gi\|67087226\|gb\|EAM06693.1\| T...	177.0	[0..2]	[217..14]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIGVVLSG CGVYDGSEIH EAVLTLLAID RNGAEAVCMA PSMEFREVNH LTSQETGATR  60
   61 NALVEAARIA RGKIRDVKDV SAVELDAVIF PGGYGAAKNL CTFAEKGAAA TINPEVARLI 120
  121 REMAVAKKPI GAICIAPALI AATLGRDYKP KVTIGTDAGT AAAITETGSE HVSCPVAEFV 180
  181 VDRENKIVTT PAYMLANRIS EAAEGIEKAV KAVVEMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	1vhqA
Description:	Crystal structure of enhancing lycopene biosynthesis protein 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.30391542469987	bayes_pls_golite062009
protein binding	1.06565672438103	bayes_pls_golite062009
ligase activity	0.606811845310629	bayes_pls_golite062009
nucleic acid binding	0.59602498623822	bayes_pls_golite062009
binding	0.588714599255874	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: