YRC Public Data Repository - Protein Structure Prediction

Protein:	CRE03637
Organism:	Caenorhabditis remanei
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRE03637.

Description	E-value	Query Range	Subject Range
gi\|40889756 - gi\|40889756\|pdb\|1UH6\|A Chain A, Solution Structure Of The Murine Ubiquitin-Like 5 Protein From Riken...	145.0	[0..1]	[73..28]
gi\|115487294, gi... - gi\|77553656\|gb\|ABA96452.1\| GRF zinc finger family protein [Oryza sativa (japonica cultivar-group)], ...	145.0	[0..1]	[72..206]
gi\|38492721 - gi\|38492721\|pdb\|1P0R\|A Chain A, Solution Structure Of Ubl5 A Human Ubiquitin-Like Protein	143.0	[0..1]	[73..21]
gi\|60653607, gi\|... - gi\|60653609\|gb\|AAX29498.1\| ubiquitin-like 5 [synthetic construct], gi\|60653607\|gb\|AAX29497.1\| ubiqui...	140.0	[0..1]	[73..1]
UBL5_DANRE - Ubiquitin-like protein 5 OS=Danio rerio GN=ubl5 PE=3 SV=1	137.0	[0..1]	[72..1]
gi\|76608539 - gi\|76608539\|ref\|XP_875489.1\| PREDICTED: similar to ubiquitin-like 5 [Bos taurus]	136.0	[0..1]	[73..1]
gi\|91078218 - gi\|91078218\|ref\|XP_969246.1\| PREDICTED: similar to predicted protein [Tribolium castaneum]	136.0	[0..1]	[73..1]
gi\|220951280 - gi\|220951280\|gb\|ACL88183.1\| ubl-PA [synthetic construct] gi\|195331931, gi... - gi\|195331931\|ref\|XP_002032652.1\| GM20845 [Drosophila sechellia], gi\|194124622\|gb\|EDW46665.1\| GM20845... gi\|195581030, gi... - gi\|195581030\|ref\|XP_002080337.1\| GD10297 [Drosophila simulans], gi\|194192346\|gb\|EDX05922.1\| GD10297 ... ubl-PA - The gene ubiquitin like is referred to in FlyBase by the symbol Dmel\ubl (CG3450, FBgn0022224). It i...	136.0	[0..1]	[73..1]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEITVNDRL GKKVRIKCNP SDTIGDLKKL IAAQTGTRWE KIVLKKWYTI YKDHITLMDY  60
   61 EIHEGFNFEL YYQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1uh6A
Description:	Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
small conjugating protein ligase activity	3.47895265760328	bayes_pls_golite062009
ubiquitin-protein ligase activity	2.99122127270119	bayes_pls_golite062009
binding	2.5881743465274	bayes_pls_golite062009
acid-amino acid ligase activity	2.56275248067993	bayes_pls_golite062009
protein tag	2.15059229834935	bayes_pls_golite062009
protein binding	1.76858817153382	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	1.25223828115784	bayes_pls_golite062009
transcription regulator activity	1.11533445164506	bayes_pls_golite062009
RNA binding	1.00651240292915	bayes_pls_golite062009
nucleic acid binding	0.896431097217265	bayes_pls_golite062009
DNA binding	0.859811565165317	bayes_pls_golite062009
SUMO ligase activity	0.80391127659342	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.536856055841234	bayes_pls_golite062009
kinase activity	0.506057697290914	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.410719674374641	bayes_pls_golite062009
protein kinase activity	0.325253662829604	bayes_pls_golite062009
transferase activity	0.236208643697075	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: