YRC Public Data Repository - Protein Structure Prediction

Protein:	HSLV_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSLV_COXBU.

Description	E-value	Query Range	Subject Range
PSB8_CANLF - Proteasome subunit beta type-8 OS=Canis lupus familiaris GN=PSMB8 PE=1 SV=1	172.0	[0..2]	[180..68]
PSB8_RAT - Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3	169.0	[0..1]	[180..67]
gi\|61357317 - gi\|61357317\|gb\|AAX41370.1\| proteasome subunit beta type 8 [synthetic construct]	168.0	[0..1]	[180..63]
gi\|4758970, gi\|2... - gi\|56207310\|emb\|CAI18625.1\| proteasome (prosome, macropain) subunit, beta type, 8 (large multifuncti...	168.0	[0..1]	[180..63]
gi\|109070671 - gi\|109070671\|ref\|XP_001115562.1\| PREDICTED: similar to proteasome beta 8 subunit isoform E2 proprote...	168.0	[0..1]	[180..67]
gi\|148229628, gi... - gi\|37589390\|gb\|AAH59335.1\| MGC69086 protein [Xenopus laevis], gi\|148229628\|ref\|NP_001080028.1\| low m...	168.0	[0..1]	[180..61]
gi\|114606761 - gi\|114606761\|ref\|XP_001167241.1\| PREDICTED: proteasome beta 8 subunit isoform 2 [Pan troglodytes]	168.0	[0..1]	[180..63]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQFRGTTIL SVRRNGKVVI GGDGQVSMGS TIMKANARKV RRLYNGKVIA GFAGGTADAF  60
   61 TLFERFESKL EKHSGNLTRA AVELAKDWRT DRILRRLEAL LTVADSKASL IITGLGDVIE 120
  121 PEQSLMAIGS GGSFAQAAAK ALLENTKLSA RKIVEKALTI AADICIYTNL NFTIEELDSE 180
  181 S

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Detection Method:	PSI-BLAST
Confidence:	33.154902
Match:	1nedA
Description:	HslV (ClpQ) protease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
endopeptidase activity	2.91106083708276	bayes_pls_golite062009
peptidase activity	2.80801539616396	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.73190506268595	bayes_pls_golite062009
hydrolase activity	2.31204586693758	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: