YRC Public Data Repository - Protein Structure Prediction

Protein:	SCPA_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCPA_COXBU.

Description	E-value	Query Range	Subject Range
gi\|83726664, gi\|... - gi\|83746711\|ref\|ZP_00943760.1\| Segregation and condensation protein ScpA [Ralstonia solanacearum UW5...	306.0	[0..2]	[264..73]
gi\|124894298, gi... - gi\|84362587\|ref\|ZP_00987205.1\| COG1354: Uncharacterized conserved protein [Burkholderia dolosa AUO15...	300.0	[0..2]	[264..24]
gi\|91782344, gi\|... - gi\|91782344\|ref\|YP_557550.1\| condensin subunit ScpA [Burkholderia xenovorans LB400], gi\|91686298\|gb\|...	300.0	[0..2]	[264..26]
gi\|134296623, gi... - gi\|67549799\|ref\|ZP_00427645.1\| Protein of unknown function DUF173 [Burkholderia vietnamiensis G4], g...	299.0	[0..2]	[264..24]
gi\|72609837, gi\|... - gi\|74017209\|ref\|ZP_00687833.1\| Protein of unknown function DUF173 [Burkholderia ambifaria AMMD], gi\|...	297.0	[0..2]	[264..24]
gi\|107023379, gi... - gi\|67659305\|ref\|ZP_00456669.1\| Protein of unknown function DUF173 [Burkholderia cenocepacia AU 1054]... gi\|254247496, gi... - gi\|84355526\|ref\|ZP_00980409.1\| COG1354: Uncharacterized conserved protein [Burkholderia cenocepacia ... gi\|67661827, gi\|... - gi\|67661827\|ref\|ZP_00459118.1\| Protein of unknown function DUF173 [Burkholderia cenocepacia HI2424],... gi\|198037031, gi... - gi\|206560989\|ref\|YP_002231754.1\| putative chromosome condensation and segregation protein [Burkholde...	297.0	[0..2]	[264..24]
gi\|77967986, gi\|... - gi\|78067241\|ref\|YP_370010.1\| condensin subunit ScpA [Burkholderia sp. 383], gi\|77967986\|gb\|ABB09366....	296.0	[0..2]	[264..24]
gi\|126228831, gi... - gi\|82531705\|ref\|ZP_00890921.1\| COG1354: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|83623930, gi\|... - gi\|83623930\|ref\|ZP_00934188.1\| COG1354: Uncharacterized conserved protein [Burkholderia mallei JHU],... gi\|194570050, gi... - gi\|83680509\|ref\|ZP_00942214.1\| COG1354: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|161357211, gi... - gi\|82536561\|ref\|ZP_00895566.1\| hypothetical protein Bpse110_02002223 [Burkholderia pseudomallei 1106... gi\|194524963, gi... - gi\|83619038\|ref\|ZP_00929482.1\| COG1354: Uncharacterized conserved protein [Burkholderia mallei FMH],... gi\|167918012 - gi\|167918012\|ref\|ZP_02505103.1\| segregation and condensation protein A [Burkholderia pseudomallei BC... gi\|194313693, gi... - gi\|254178030\|ref\|ZP_04884685.1\| segregation and condensation protein A [Burkholderia mallei ATCC 103... gi\|167901738 - gi\|167901738\|ref\|ZP_02488943.1\| segregation and condensation protein A [Burkholderia pseudomallei NC... gi\|167909978 - gi\|167909978\|ref\|ZP_02497069.1\| segregation and condensation protein A [Burkholderia pseudomallei 11... gi\|217396782, gi... - gi\|217419478\|ref\|ZP_03450984.1\| segregation and condensation protein A [Burkholderia pseudomallei 57... gi\|167718564 - gi\|167718564\|ref\|ZP_02401800.1\| segregation and condensation protein A [Burkholderia pseudomallei DM... gi\|167737592 - gi\|167737592\|ref\|ZP_02410366.1\| segregation and condensation protein A [Burkholderia pseudomallei 14... gi\|124384825, gi... - gi\|124384825\|ref\|YP_001028920.1\| segregation and condensation protein A [Burkholderia mallei NCTC 10... gi\|243061358, gi... - gi\|243061358\|gb\|EES43544.1\| segregation and condensation protein A [Burkholderia mallei PRL-20], gi\|... gi\|167844744 - gi\|167844744\|ref\|ZP_02470252.1\| segregation and condensation protein A [Burkholderia pseudomallei B7... gi\|167893280 - gi\|167893280\|ref\|ZP_02480682.1\| segregation and condensation protein A [Burkholderia pseudomallei 78... gi\|167814727 - gi\|167814727\|ref\|ZP_02446407.1\| segregation and condensation protein A [Burkholderia pseudomallei 91... gi\|167823181 - gi\|167823181\|ref\|ZP_02454652.1\| segregation and condensation protein A [Burkholderia pseudomallei 9] gi\|52209048, gi\|... - gi\|53718634\|ref\|YP_107620.1\| hypothetical protein BPSL0992 [Burkholderia pseudomallei K96243], gi\|52... gi\|52428647, gi\|... - gi\|53725224\|ref\|YP_102474.1\| segregation and condensation protein A [Burkholderia mallei ATCC 23344]... gi\|87315850, gi\|... - gi\|87315850\|ref\|ZP_01096873.1\| COG1354: Uncharacterized conserved protein [Burkholderia mallei 20027... gi\|76811700, gi\|... - gi\|76811700\|ref\|YP_332616.1\| segregation and condensation protein A [Burkholderia pseudomallei 1710b... gi\|254196273, gi... - gi\|67760580\|ref\|ZP_00499300.1\| COG1354: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|85067131 - gi\|85067131\|ref\|ZP_01027984.1\| COG1354: Uncharacterized conserved protein [Burkholderia mallei 10229... gi\|225933584, gi... - gi\|226194499\|ref\|ZP_03790097.1\| segregation and condensation protein A [Burkholderia pseudomallei Pa... gi\|237811315, gi... - gi\|237811315\|ref\|YP_002895766.1\| ScpA/B protein [Burkholderia pseudomallei MSHR346], gi\|237504687\|gb... gi\|126242539, gi... - gi\|67646045\|ref\|ZP_00444313.1\| COG1354: Uncharacterized conserved protein [Burkholderia mallei NCTC ... gi\|254181411, gi... - gi\|99910336\|ref\|ZP_01317363.1\| hypothetical protein Bpse1_03003283 [Burkholderia pseudomallei 1655],... gi\|67636224, gi\|... - gi\|67636224\|ref\|ZP_00435171.1\| COG1354: Uncharacterized conserved protein [Burkholderia mallei 10399... gi\|238520342, gi... - gi\|67639744\|ref\|ZP_00438580.1\| segregation and condensation protein A [Burkholderia mallei GB8 horse... gi\|254190810, gi... - gi\|67752093\|ref\|ZP_00491109.1\| COG1354: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|84522199, gi\|... - gi\|84522199\|ref\|ZP_01009335.1\| COG1354: Uncharacterized conserved protein [Burkholderia mallei SAVP1... gi\|254217603, gi... - gi\|90293943\|ref\|ZP_01213540.1\| hypothetical protein Bpse17_02001244 [Burkholderia pseudomallei 1710a... gi\|67736136, gi\|... - gi\|67736136\|ref\|ZP_00487041.1\| COG1354: Uncharacterized conserved protein [Burkholderia pseudomallei...	295.0	[0..2]	[264..25]
gi\|167580173 - gi\|167580173\|ref\|ZP_02373047.1\| segregation and condensation protein A [Burkholderia thailandensis T... gi\|83718529, gi\|... - gi\|83718529\|ref\|YP_441405.1\| segregation and condensation protein A [Burkholderia thailandensis E264... gi\|167835823 - gi\|167835823\|ref\|ZP_02462706.1\| segregation and condensation protein A [Burkholderia thailandensis M... gi\|167618275 - gi\|167618275\|ref\|ZP_02386906.1\| segregation and condensation protein A [Burkholderia thailandensis B...	295.0	[0..2]	[264..25]
gi\|77457716, gi\|... - gi\|77457716\|ref\|YP_347221.1\| condensin subunit ScpA [Pseudomonas fluorescens Pf0-1], gi\|77381719\|gb\|...	293.0	[0..1]	[265..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQEVVNQL AGFEVKVSGQ PLSKLPEDLY IPPDALRVFL EAFEGPLDLL LYLIKKHNID  60
   61 ILDIPIAEIT RQYMQFVDLM REMRIELAAE YLVMAAMLAE IKSRLLLPRP VVEEENEQDP 120
  121 RAELVRRLQE YERYKKAAYD LDQLPRVGRD TFIADAAVPP MNTAKIHPTA ELPELLNALK 180
  181 DVLQRA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.79588
Match:	PF02616.5
Description:	No description for PF02616.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [187-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLYNAHSIAR EPLSIRERMS RILSLVDKEN FIAFTRLFTV EEGRMGVVVT LIATLELIRQ  60
   61 SVIELVQAEP FALIHIRAKG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.47
Match:	1w1wE
Description:	Sc Smc1hd:Scc1-C complex, ATPgS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.88909660213693	bayes_pls_golite062009
transcription regulator activity	0.659146952966611	bayes_pls_golite062009
nucleic acid binding	0.526614151800537	bayes_pls_golite062009
DNA binding	0.443743931209129	bayes_pls_golite062009
protein binding	0.215355480170793	bayes_pls_golite062009
sequence-specific DNA binding	0.0198908199689938	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: