YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654198, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654198, gi|....

Description	E-value	Query Range	Subject Range
UCKB_DICDI - Uridine-cytidine kinase B OS=Dictyostelium discoideum GN=udkB PE=3 SV=2 gi\|60472219, gi\|... - gi\|66820973\|ref\|XP_644025.1\| uridine kinase [Dictyostelium discoideum AX4], gi\|60472219\|gb\|EAL70172....	211.0	[0..2]	[213..12]
gi\|76611769 - gi\|76611769\|ref\|XP_614178.2\| PREDICTED: similar to uridine-cytidine kinase 2 [Bos taurus]	210.0	[0..4]	[206..236]
gi\|42407979, gi\|... - gi\|50947885\|ref\|XP_483470.1\| putative uridine kinase/uracil phosphoribosyltransferase [Oryza sativa ...	210.0	[0..2]	[213..68]
gi\|109469352, gi... - gi\|109471464\|ref\|XP_001056276.1\| PREDICTED: similar to Uridine/cytidine kinase-like 1 isoform 1 [Rat...	210.0	[0..2]	[215..79]
gi\|220953536, gi... - gi\|220953536\|gb\|ACL89311.1\| l(2)k01209-PB [synthetic construct], gi\|220943522\|gb\|ACL84304.1\| l(2)k01... l(2)k01209-PC, l... - The gene lethal (2) k01209 is referred to in FlyBase by the symbol Dmel\l(2)k01209 (CG4798, FBgn0022...	209.0	[0..4]	[214..185]
gi\|68436585 - gi\|68436585\|ref\|XP_699134.1\| PREDICTED: similar to Uridine/cytidine kinase-like 1 [Danio rerio]	209.0	[0..3]	[214..144]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNNVIIIGI SGPSASGKSL LANTIVNELG SDQVVVISED SYYKDLGDMP FEERAKINYD  60
   61 HPDSLDHELL YQHLLQLQQG NAIAVPCYDH SRHRRLEKTK TVGRHRIIVL EGILLFVEAQ 120
  121 LREIMDIRIF MDTPLDICLL RRLQRDIVER ERSLEGVLTQ YQETVRPMYL QFTEPSKRYA 180
  181 DIIVPRGGEN RIAIEMIQAK MRELLGVNGA LKRHA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	1udwA
Description:	Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, CTP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleobase, nucleoside, nucleotide kinase activity	3.31021342806183	bayes_pls_golite062009
nucleotide kinase activity	2.24094813695083	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	1.96697952975573	bayes_pls_golite062009
kinase activity	1.60827037072506	bayes_pls_golite062009
binding	1.25659194713805	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
hydrolase activity	0.420858111948277	bayes_pls_golite062009
adenylate kinase activity	0.373057703057608	bayes_pls_golite062009
nucleic acid binding	0.216266069700019	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: