YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541086, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541086, gi|....

Description	E-value	Query Range	Subject Range
gi\|4127534 - gi\|4127534\|emb\|CAA09426.1\| arginine repressor [Geobacillus stearothermophilus]	198.0	[0..8]	[152..3]
ARGR_GEOKA - Arginine repressor OS=Geobacillus kaustophilus GN=argR PE=3 SV=1 gi\|221088855, gi... - gi\|221088855\|ref\|ZP_03558381.1\| arginine repressor, ArgR [Geobacillus sp. Y412MC61], gi\|220707216\|gb... ARGR_GEOKA - Arginine repressor OS=Geobacillus kaustophilus (strain HTA426) GN=argR PE=3 SV=1 gi\|229498343, gi... - gi\|229498343\|ref\|ZP_04392039.1\| arginine repressor, ArgR [Geobacillus sp. Y412MC52], gi\|229330714\|gb...	196.0	[0..8]	[152..3]
gi\|37678650, gi\|... - gi\|37678650\|ref\|NP_933259.1\| arginine repressor [Vibrio vulnificus YJ016], gi\|37197390\|dbj\|BAC93230....	194.0	[0..3]	[153..56]
ARGR_VIBCB - Arginine repressor OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=argR PE=3 SV=1 gi\|148869250, gi... - gi\|153834402\|ref\|ZP_01987069.1\| arginine repressor [Vibrio harveyi HY01], gi\|148869250\|gb\|EDL68272.1... ARGR_VIBPA - Arginine repressor OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=argR PE=3 SV=1 ARGR_VIBPA - Arginine repressor OS=Vibrio parahaemolyticus GN=argR PE=3 SV=1	194.0	[0..3]	[153..2]
gi\|116184028, gi... - gi\|75854581\|ref\|ZP_00762267.1\| COG1438: Arginine repressor [Vibrio sp. Ex25], gi\|116184028\|ref\|ZP_01...	192.0	[0..3]	[153..2]
gi\|89151193, gi\|... - gi\|89200812\|ref\|ZP_01179562.1\| Arginine repressor [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|...	192.0	[0..8]	[152..3]
gi\|47504841, gi\|... - gi\|47529693\|ref\|YP_021042.1\| arginine repressor [Bacillus anthracis str. 'Ames Ancestor'], gi\|475048... gi\|254721774 - gi\|254721774\|ref\|ZP_05183563.1\| arginine repressor [Bacillus anthracis str. A1055] gi\|49187077, gi\|... - gi\|49187077\|ref\|YP_030329.1\| arginine repressor [Bacillus anthracis str. Sterne], gi\|49181004\|gb\|AAT... gi\|254736287 - gi\|254736287\|ref\|ZP_05193993.1\| arginine repressor [Bacillus anthracis str. Western North America US... gi\|30258895, gi\|... - gi\|30264250\|ref\|NP_846627.1\| arginine repressor [Bacillus anthracis str. Ames], gi\|30258895\|gb\|AAP28... ARGR_BACAA - Arginine repressor OS=Bacillus anthracis (strain A0248) GN=argR PE=3 SV=1 ARGR2_BACC1 - Arginine repressor OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=argR2 PE=3 SV=1 gi\|254683939 - gi\|254683939\|ref\|ZP_05147799.1\| arginine repressor [Bacillus anthracis str. CNEVA-9066] gi\|254757912 - gi\|254757912\|ref\|ZP_05209939.1\| arginine repressor [Bacillus anthracis str. Australia 94] gi\|254741325 - gi\|254741325\|ref\|ZP_05199012.1\| arginine repressor [Bacillus anthracis str. Kruger B] gi\|254754041 - gi\|254754041\|ref\|ZP_05206076.1\| arginine repressor [Bacillus anthracis str. Vollum] ARGR2_BACHK - Arginine repressor OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=argR2 PE=3 SV=1 ARGR_BACCZ - Arginine repressor OS=Bacillus cereus (strain ZK / E33L) GN=argR PE=3 SV=1 gi\|218538816, gi... - gi\|218905311\|ref\|YP_002453145.1\| arginine repressor [Bacillus cereus AH820], gi\|218538816\|gb\|ACK9121... ARGR2_BACHK - Arginine repressor OS=Bacillus thuringiensis subsp. konkukian GN=argR2 PE=3 SV=1 ARGR_BACC7 - Arginine repressor OS=Bacillus cereus (strain AH187) GN=argR PE=3 SV=1 ARGR_BACCQ - Arginine repressor OS=Bacillus cereus (strain Q1) GN=argR PE=3 SV=1 gi\|196041524, gi... - gi\|196041524\|ref\|ZP_03108816.1\| arginine repressor [Bacillus cereus NVH0597-99], gi\|196027512\|gb\|EDX... gi\|195992557, gi... - gi\|196035018\|ref\|ZP_03102425.1\| arginine repressor [Bacillus cereus W], gi\|195992557\|gb\|EDX56518.1\| ... gi\|206976327, gi... - gi\|206976327\|ref\|ZP_03237235.1\| arginine repressor [Bacillus cereus H3081.97], gi\|206745523\|gb\|EDZ56... gi\|196046342, gi... - gi\|196046342\|ref\|ZP_03113568.1\| arginine repressor [Bacillus cereus 03BB108], gi\|196022812\|gb\|EDX614... gi\|170125873, gi... - gi\|170709211\|ref\|ZP_02899634.1\| arginine repressor [Bacillus anthracis str. A0389], gi\|170125873\|gb\|... gi\|190565890, gi... - gi\|190565890\|ref\|ZP_03018809.1\| arginine repressor [Bacillus anthracis Tsiankovskii-I], gi\|190562809... gi\|177654793, gi... - gi\|177654793\|ref\|ZP_02936550.1\| arginine repressor [Bacillus anthracis str. A0174], gi\|172080454\|gb\|... ARGR_BACAN - Arginine repressor OS=Bacillus anthracis GN=argR PE=3 SV=1 gi\|228842998, gi... - gi\|228916811\|ref\|ZP_04080376.1\| Arginine repressor [Bacillus thuringiensis serovar pulsiensis BGSC 4... gi\|228922930, gi... - gi\|228922930\|ref\|ZP_04086224.1\| Arginine repressor [Bacillus thuringiensis serovar huazhongensis BGS... ARGR_BACC3 - Arginine repressor OS=Bacillus cereus (strain 03BB102) GN=argR PE=3 SV=1 ARGR_BACAC - Arginine repressor OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=argR PE=3 SV=1 gi\|228987366, gi... - gi\|228987366\|ref\|ZP_04147486.1\| Arginine repressor [Bacillus thuringiensis serovar tochigiensis BGSC... gi\|228729442, gi... - gi\|229031824\|ref\|ZP_04187812.1\| Arginine repressor [Bacillus cereus AH1271], gi\|228729442\|gb\|EEL8043... gi\|228929221, gi... - gi\|228929221\|ref\|ZP_04092248.1\| Arginine repressor [Bacillus thuringiensis serovar pondicheriensis B... gi\|228811879, gi... - gi\|228947892\|ref\|ZP_04110179.1\| Arginine repressor [Bacillus thuringiensis serovar monterrey BGSC 4A... gi\|229098647, gi... - gi\|229098647\|ref\|ZP_04229587.1\| Arginine repressor [Bacillus cereus Rock3-29], gi\|228684726\|gb\|EEL38... gi\|229104803, gi... - gi\|229104803\|ref\|ZP_04235464.1\| Arginine repressor [Bacillus cereus Rock3-28], gi\|228678676\|gb\|EEL32... gi\|228707198, gi... - gi\|229075883\|ref\|ZP_04208859.1\| Arginine repressor [Bacillus cereus Rock4-18], gi\|228707198\|gb\|EEL59... gi\|229093234, gi... - gi\|229093234\|ref\|ZP_04224352.1\| Arginine repressor [Bacillus cereus Rock3-42], gi\|228690208\|gb\|EEL44... gi\|229140909, gi... - gi\|229140909\|ref\|ZP_04269453.1\| Arginine repressor [Bacillus cereus BDRD-ST26], gi\|228642485\|gb\|EEK9... gi\|228625731, gi... - gi\|229157774\|ref\|ZP_04285849.1\| Arginine repressor [Bacillus cereus ATCC 4342], gi\|228625731\|gb\|EEK8... gi\|229117672, gi... - gi\|229117672\|ref\|ZP_04247042.1\| Arginine repressor [Bacillus cereus Rock1-3], gi\|228665764\|gb\|EEL212... gi\|228659830, gi... - gi\|229123695\|ref\|ZP_04252890.1\| Arginine repressor [Bacillus cereus 95/8201], gi\|228659830\|gb\|EEL154... gi\|228597045, gi... - gi\|229186418\|ref\|ZP_04313582.1\| Arginine repressor [Bacillus cereus BGSC 6E1], gi\|228597045\|gb\|EEK54... gi\|229198302, gi... - gi\|229198302\|ref\|ZP_04325009.1\| Arginine repressor [Bacillus cereus m1293], gi\|228585181\|gb\|EEK43292... gi\|229163121, gi... - gi\|229163121\|ref\|ZP_04291077.1\| Arginine repressor [Bacillus cereus R309803], gi\|228620527\|gb\|EEK773... gi\|228608520, gi... - gi\|229174852\|ref\|ZP_04302372.1\| Arginine repressor [Bacillus cereus MM3], gi\|228608520\|gb\|EEK65822.1...	192.0	[0..8]	[152..3]
gi\|28805307 - gi\|28805307\|dbj\|BAC58587.1\| arginine repressor [Vibrio parahaemolyticus RIMD 2210633] gi\|28805307, gi\|... - gi\|28897098\|ref\|NP_796703.1\| arginine repressor [Vibrio parahaemolyticus RIMD 2210633], gi\|28805307\|...	192.0	[0..1]	[153..16]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRKSDPQKP LTEAVKTLLW TEKITKQDEL VTKLRQQGYD INQSKISRLL RKLLAIKVKN  60
   61 EEGQTVYTLS KEPLPPSTKS PLTQLVLDIT ANETLIFVKT SPGSAPLIAR LLDYHKKDSM 120
  121 ILATIAGDDT IFIAPKSIQQ IDQALIEVKA SLESIKNKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.09691
Match:	1b4aA
Description:	Arginine repressor (ArgR), N-terminal DNA-binding domain; C-terminal domain of arginine repressor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: