YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376159, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376159, gi|....

Description	E-value	Query Range	Subject Range
gi\|28172994 - gi\|28172994\|gb\|AAO32664.1\|AF499932_6 nucleotide sugar dehydrogenase [Vibrio vulnificus]	334.0	[0..1]	[387..1]
gi\|68054223, gi\|... - gi\|68054223\|ref\|ZP_00538387.1\| UDP-glucose 6-dehydrogenase [Exiguobacterium sibiricum 255-15], gi\|68...	334.0	[0..1]	[387..1]
UDG8_ECOLX - UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=ugd PE=3 SV=1	333.0	[0..1]	[387..1]
gi\|157161532, gi... - gi\|75196105\|ref\|ZP_00706175.1\| COG1004: Predicted UDP-glucose 6-dehydrogenase [Escherichia coli HS],...	330.0	[0..1]	[387..1]
gi\|88777378, gi\|... - gi\|88799947\|ref\|ZP_01115519.1\| nucleotide sugar dehydrogenase [Reinekea sp. MED297], gi\|88777378\|gb\|...	330.0	[0..1]	[387..1]
gi\|84386893, gi\|... - gi\|84386893\|ref\|ZP_00989917.1\| nucleotide sugar dehydrogenase [Vibrio splendidus 12B01], gi\|84378183...	330.0	[0..1]	[387..1]
gi\|34863494 - gi\|34863494\|gb\|AAQ82924.1\| UDP-glucose-6-dehydrogenase [Raoultella terrigena]	329.0	[0..1]	[387..1]
gi\|38636583 - gi\|38636583\|dbj\|BAD03946.1\| UDP-glucose dehydrogenase [Klebsiella pneumoniae] gi\|238895615, gi... - gi\|238895615\|ref\|YP_002920350.1\| UDP-glucose 6-dehydrogenase [Klebsiella pneumoniae NTUH-K2044], gi\|...	329.0	[0..1]	[387..1]
gi\|187430399, gi... - gi\|75177156\|ref\|ZP_00697254.1\| COG1004: Predicted UDP-glucose 6-dehydrogenase [Shigella boydii BS512...	329.0	[0..1]	[387..1]

Back

Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIVVVGMGY VGLSNAVLLA QQNQVTAIDL MPERVKLVND RKSTVADNLI EEYLRNSALN  60
   61 LRATMDKNAV KDADFVIIAT PTDYDPQTNY FNTQSVENVA KEVLSLNPDT TIIIKSTVPV 120
  121 GFTASLRTRL NSDNILFSPE FLREGQALYD NLHPSRIIVG ERSARAQTFA TLLVNAAIKQ 180
  181 DIPILLTDST EAEAIKLFAN TFLAMRVAYF NELDTYAESR GLNTRQIIEG VCLDPRIGDY 240
  241 YNNPSFGYGG YCLPKDTKQL LANYNDVPNN LISAIVDSNT TRKDFIADAI ISKQPKRVGI 300
  301 YRLIMKSESD NFRASAVQGV MKRIKAKGIE VVVYEPVLKE SEFFKSTVIR NLEEFKAMCD 360
  361 VIVTNRMTSE LEDVADKVYT RDLFHHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	1dliA
Description:	UDP-glucose dehydrogenase (UDPGDH), middle domain; UDP-glucose dehydrogenase (UDPGDH); UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.16785883389468	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.17725706496184	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.17019598256699	bayes_pls_golite062009
phosphogluconate dehydrogenase (decarboxylating) activity	0.85002953624923	bayes_pls_golite062009
dTDP-4-dehydrorhamnose reductase activity	0.676398540588099	bayes_pls_golite062009
fatty acid synthase activity	0.561621495862231	bayes_pls_golite062009
glycerol-3-phosphate dehydrogenase (NAD+) activity	0.323038721318701	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: