YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376070, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	472 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376070, gi|....

Description	E-value	Query Range	Subject Range
gi\|112949653, gi... - gi\|118725042\|ref\|NP_720470.2\| heavy metal efflux protein, putative [Shewanella oneidensis MR-1], gi\|...	301.0	[0..1]	[472..23]
gi\|117922414, gi... - gi\|78684436\|ref\|ZP_00849220.1\| Secretion protein HlyD [Shewanella sp. ANA-3], gi\|78507768\|gb\|EAP2127...	297.0	[0..1]	[472..23]
gi\|82496249, gi\|... - gi\|82496249\|ref\|ZP_00881819.1\| Secretion protein HlyD [Shewanella sp. MR-4], gi\|82405823\|gb\|EAP46493...	297.0	[0..1]	[472..23]
gi\|68542497, gi\|... - gi\|68542497\|ref\|ZP_00582226.1\| Secretion protein HlyD [Shewanella baltica OS155], gi\|68519778\|gb\|EAN...	293.0	[0..1]	[472..23]
gi\|78511390, gi\|... - gi\|78689233\|ref\|ZP_00853897.1\| Secretion protein HlyD [Shewanella sp. MR-7], gi\|78511390\|gb\|EAP24748...	292.0	[0..3]	[472..25]
gi\|113947414, gi... - gi\|160877405\|ref\|YP_001556721.1\| RND family efflux transporter MFP subunit [Shewanella baltica OS195...	290.0	[0..1]	[472..23]
gi\|146291261, gi... - gi\|77813739\|ref\|ZP_00813012.1\| Secretion protein HlyD [Shewanella putrefaciens CN-32], gi\|77811245\|g...	286.0	[0..1]	[472..23]
gi\|120600703, gi... - gi\|82743033\|ref\|ZP_00905702.1\| Secretion protein HlyD [Shewanella sp. W3-18-1], gi\|82719607\|gb\|EAP54...	279.0	[0..7]	[472..34]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPWLAQAQ LVDPATQTEA GHQHHSNTTN QVKTYTCPMH PEVESHEPGR CPQCNMFLVE  60
   61 KADNPNTAAE HQAHTPSQNA TQVFETPTPK ANHLVKNQSS EATIKYVCPM HAHIISDAPG 120
  121 TCPICGM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.74
Match:	2innA
Description:	No description for 2innA was found.

Predicted Domain #2

Region A:
Residues: [128-472]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLEKVETGGN TQEININVSG SMQQALALKV AKVERDTLWK FVETVGQIDY DESQISHIHA  60
   61 RVTGWVEKLM VKSMGDTVKK GQLLYEIYSP DLVNAQDDYL LALDTAKTSG NQRYQDLVRR 120
  121 AGLRLSFLGF NEQQIKQLAN SRQTQYRVPF YAQQEGVVET LSIRDGMYIE PSTEVMSLVD 180
  181 LSKVWVIADV FENEQSWISL GQKAEVSVPA MNIRGIEGKI DYIYPELDPI TRSLRVRVVL 240
  241 NNKDISLRPK TLAKVALFGG PNKDVLVIPQ EALIQTGKEN RVIVKQADDS FIAKAVTVGM 300
  301 MSQGKAEIVS GLSEGERVVT SGQFLLDSEA SLKGSLMRLN SGHQH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	1t5eA
Description:	The structure of MexA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	4.64829294279324	bayes_pls_golite062009
protein transporter activity	3.50951009895823	bayes_pls_golite062009
transmembrane transporter activity	3.3430410220484	bayes_pls_golite062009
cation transmembrane transporter activity	2.81145434366148	bayes_pls_golite062009
ion transmembrane transporter activity	2.80117130114792	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.70954389383019	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.56749631989168	bayes_pls_golite062009
drug transmembrane transporter activity	2.31438469288221	bayes_pls_golite062009
	2.24479805331017	bayes_pls_golite062009
substrate-specific transporter activity	2.06907229708248	bayes_pls_golite062009
	1.4971766763537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: