YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376048, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376048, gi|....

Description	E-value	Query Range	Subject Range
gi\|48729290, gi\|... - gi\|77458552\|ref\|YP_348057.1\| Mandelate racemase/muconate lactonizing enzyme [Pseudomonas fluorescens...	259.0	[0..26]	[373..10]
gi\|95111185 - gi\|95111185\|emb\|CAK15905.1\| muconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE) ... gi\|104782198, gi... - gi\|95111185\|emb\|CAK15905.1\| muconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE) ...	259.0	[0..21]	[372..1]
gi\|13660733 - gi\|13660733\|gb\|AAK33064.1\| cis,cis-muconate lactonizing enzyme [Pseudomonas putida]	258.0	[0..26]	[372..6]
gi\|26990423, gi\|... - gi\|26990423\|ref\|NP_745848.1\| muconate and chloromuconate cycloisomerase [Pseudomonas putida KT2440],...	256.0	[0..21]	[372..1]
gi\|12862418 - gi\|12862418\|dbj\|BAB32456.1\| cis,cis-muconate cycloisomerase CatB [Pseudomonas sp. CA10]	256.0	[0..21]	[373..1]

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Predicted Domain #1

Region A:
Residues: [1-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTSLSLYL YRLPLDSFLP VGKQRIDHRK GLVLQAKATA DGEVCDTEIS NAEVTDSEVT  60
   61 EGEVKESHVE IAPLSGFDID QQPLSGFSRE SLDEVQQALT VLLPKLQNQS IDCLLEQAEA 120
  121 SPYPSIAFGL SLLHAKLSGK LDAVRPLTTA VPLIYQPTDA PKAELIAKIA SLKPSVRSVK 180
  181 VKVAQTSMED ELSLIYGILS QRPDLKLRLD ANCGFSLEQA LDFAACLPLD SIEYIEEPCQ 240
  241 HPQDNHTLYR AIPLPYALDE SLNDPDYQFV MHEGLTALII KPMLLGSIEK LQRLIDEAHN 300
  301 HGVRCILSSS LESSLGINDL AHLAAILTPD EIPGLDTLTA FSQDLLVPSG KLQCLTLQCL 360
  361 TLNQLERVAS TVQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1fhuA
Description:	O-succinylbenzoate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydro-lyase activity	1.37262309948483	bayes_pls_golite062009
catalytic activity	0.904956784158091	bayes_pls_golite062009
lyase activity	0.649994293495516	bayes_pls_golite062009
carbon-oxygen lyase activity	0.500416702127569	bayes_pls_golite062009
phosphopyruvate hydratase activity	0.135147261429977	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: