YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350913, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	549 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350913, gi|....

Description	E-value	Query Range	Subject Range
gi\|120557166, gi... - gi\|82742716\|ref\|ZP_00905398.1\| Electron-transferring-flavoprotein dehydrogenase [Shewanella sp. W3-1...	436.0	[0..1]	[549..1]
gi\|78687247, gi\|... - gi\|78687247\|ref\|ZP_00852000.1\| Electron-transferring-flavoprotein dehydrogenase [Shewanella sp. ANA-...	436.0	[0..1]	[549..1]
gi\|146291495, gi... - gi\|77814642\|ref\|ZP_00813900.1\| Electron-transferring-flavoprotein dehydrogenase [Shewanella putrefac...	435.0	[0..1]	[549..1]
gi\|78509527, gi\|... - gi\|78691073\|ref\|ZP_00855704.1\| Electron-transferring-flavoprotein dehydrogenase [Shewanella sp. MR-7... gi\|82495512, gi\|... - gi\|82495512\|ref\|ZP_00881087.1\| Electron-transferring-flavoprotein dehydrogenase [Shewanella sp. MR-4...	434.0	[0..1]	[549..1]
gi\|68541242, gi\|... - gi\|68541242\|ref\|ZP_00580988.1\| Electron-transferring-flavoprotein dehydrogenase [Shewanella baltica ... gi\|151363447, gi... - gi\|152998829\|ref\|YP_001364510.1\| electron-transferring-flavoprotein dehydrogenase [Shewanella baltic...	432.0	[0..1]	[549..1]
gi\|63255941, gi\|... - gi\|66045234\|ref\|YP_235075.1\| electron-transferring-flavoprotein dehydrogenase [Pseudomonas syringae ...	431.0	[0..1]	[549..1]
gi\|113908452, gi... - gi\|160873410\|ref\|YP_001552726.1\| electron-transferring-flavoprotein dehydrogenase [Shewanella baltic...	431.0	[0..1]	[549..1]
gi\|78366789, gi\|... - gi\|78366789\|ref\|ZP_00837066.1\| Electron-transferring-flavoprotein dehydrogenase [Shewanella sp. PV-4...	431.0	[0..1]	[549..1]
gi\|89092384, gi\|... - gi\|89092384\|ref\|ZP_01165338.1\| electron transfer flavoprotein-ubiquinone oxidoreductase, putative [O...	431.0	[0..1]	[549..1]
gi\|95111664, gi\|... - gi\|95111664\|emb\|CAK16385.1\| putative electron transfer flavoprotein-ubiquinone oxidoreductase [Pseud... gi\|95111664 - gi\|95111664\|emb\|CAK16385.1\| putative electron transfer flavoprotein-ubiquinone oxidoreductase [Pseud...	429.0	[0..1]	[549..7]

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Predicted Domain #1

Region A:
Residues: [1-549]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERESMEFDV VIVGAGPAGL ATACRLMQIS QDSGKEITVC VVEKGSEVGA HILSGAVFEP  60
   61 RVLDELFSDW RDNGAPVTTA VTHDEIYLLS SETDSKLMPN AFVPKTMHNE GNYIVSVGNL 120
  121 CRWLATRAEA LGVEIFPGFA ASELLFNEDN SVKGILIGDM GVGADGQPKD SFMPGMELHA 180
  181 KYTVFSEGCR GHLGKQLIAK YHLDNGKTPQ HYGLGFKEIW KVPAEQHEQG KVVHTGGWPL 240
  241 TDGASGGGFL YHMEDNQIAV GLIIDLNYKN PHLSPFDEFQ RYKTHPVIAK YLAGGERLTY 300
  301 GARAITKGGL NSLPKMSFPG GLLIGCDAGT LNFAKIKGTH TAMKSGIVAA ETLAKAMMAE 360
  361 VEGGKDLDCY QTHLEESWLY EELYKSRNFG PAMHKFGTFL GGAFNYIDQN WFGGKFPITL 420
  421 RDEHPDYAQM APVSAYSKID YPKPDGKLSF DKLSSVYLSS TYHEEDQPCH LRLKDNSIPL 480
  481 GINLTQFNEP AQRYCPAGVY EIVEEAGKPK FVINAQNCIH CKTCDIKDPS QNITWVTPEG 540
  541 GGGPNYPNM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.0
Match:	2gmhA
Description:	No description for 2gmhA was found.

Predicted functions:

Term	Confidence	Notes
NADH dehydrogenase activity	6.5929955386305	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	6.45562261241375	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	6.34963309803617	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	5.69483449389334	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	4.45434904225178	bayes_pls_golite062009
oxidoreductase activity	3.38767199872766	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	3.11137503143637	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	3.04960158864768	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.87261684242536	bayes_pls_golite062009
formate dehydrogenase activity	2.79579164562277	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor	2.25002926602325	bayes_pls_golite062009
electron-transferring-flavoprotein dehydrogenase activity	1.55451764082771	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.45104542724719	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	1.35744482443829	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.31328088143083	bayes_pls_golite062009
transporter activity	1.29839290134235	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	1.08975609376408	bayes_pls_golite062009
binding	1.08897727611544	bayes_pls_golite062009
transmembrane transporter activity	1.07862908893913	bayes_pls_golite062009
catalytic activity	1.03127962968326	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.69501605197281	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors	0.643810447309487	bayes_pls_golite062009
substrate-specific transporter activity	0.556967966402473	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.31459693204333	bayes_pls_golite062009
active transmembrane transporter activity	0.301257942260531	bayes_pls_golite062009
protein binding	0.247306689726508	bayes_pls_golite062009
nucleic acid binding	0.162130833238942	bayes_pls_golite062009
NADPH-adrenodoxin reductase activity	0.10059033442163	bayes_pls_golite062009
primary active transmembrane transporter activity	0.0724852054074128	bayes_pls_golite062009
DNA binding	0.022476246602636	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: