YRC Public Data Repository - Protein Structure Prediction

Protein:	RNPH_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNPH_SHEON.

Description	E-value	Query Range	Subject Range
gi\|107104436 - gi\|107104436\|ref\|ZP_01368354.1\| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2]	278.0	[0..2]	[236..3]
RNPH_PSEA7 - Ribonuclease PH OS=Pseudomonas aeruginosa (strain PA7) GN=rph PE=3 SV=1	278.0	[0..2]	[236..3]
RNPH_PSEA8 - Ribonuclease PH OS=Pseudomonas aeruginosa (strain LESB58) GN=rph PE=3 SV=1 gi\|254237972, gi... - gi\|84317970\|ref\|ZP_00966404.1\| COG0689: RNase PH [Pseudomonas aeruginosa C3719], gi\|254237972\|ref\|ZP... gi\|254243780, gi... - gi\|84323960\|ref\|ZP_00972025.1\| COG0689: RNase PH [Pseudomonas aeruginosa 2192], gi\|254243780\|ref\|ZP_... RNPH_PSEAB - Ribonuclease PH OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rph PE=3 SV=1 RNPH_PSEAE - Ribonuclease PH OS=Pseudomonas aeruginosa GN=rph PE=1 SV=2 RNPH_PSEAE - Ribonuclease PH OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=r...	277.0	[0..2]	[236..3]
RNPH_VIBF1 - Ribonuclease PH OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rph PE=3 SV=1	277.0	[0..1]	[236..1]
gi\|49082078 - gi\|49082078\|gb\|AAT50439.1\| PA5334 [synthetic construct]	274.0	[0..2]	[236..3]
gi\|67154919 - gi\|67154919\|ref\|ZP_00416664.1\| Ribonuclease PH [Azotobacter vinelandii AvOP] RNPH_AZOVD - Ribonuclease PH OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rph PE=3 SV=1	274.0	[0..2]	[236..3]
RNPH_PHOLL - Ribonuclease PH OS=Photorhabdus luminescens subsp. laumondii GN=rph PE=3 SV=1 RNPH_PHOLL - Ribonuclease PH OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) ...	273.0	[0..1]	[236..1]
gi\|124114467, gi... - gi\|153216091\|ref\|ZP_01950265.1\| ribonuclease PH [Vibrio cholerae 1587], gi\|124114467\|gb\|EAY33287.1\| ... gi\|124118755, gi... - gi\|153222615\|ref\|ZP_01953319.1\| ribonuclease PH [Vibrio cholerae MAK 757], gi\|124118755\|gb\|EAY37498.... gi\|9654617, gi\|1... - gi\|9654617\|gb\|AAF93386.1\| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|1564024... gi\|153819951, gi... - gi\|153819951\|ref\|ZP_01972618.1\| ribonuclease PH [Vibrio cholerae NCTC 8457], gi\|126509515\|gb\|EAZ7210... gi\|153821600, gi... - gi\|229509359\|ref\|ZP_04398842.1\| ribonuclease PH [Vibrio cholerae B33], gi\|229353674\|gb\|EEO18611.1\| r... gi\|153825939, gi... - gi\|153825939\|ref\|ZP_01978606.1\| ribonuclease PH [Vibrio cholerae MZO-2], gi\|149740347\|gb\|EDM54483.1\|... gi\|150420729, gi... - gi\|75824561\|ref\|ZP_00754012.1\| COG0689: RNase PH [Vibrio cholerae RC385], gi\|254222812\|ref\|ZP_049166... gi\|75830215, gi\|... - gi\|75830215\|ref\|ZP_00759497.1\| COG0689: RNase PH [Vibrio cholerae MO10], gi\|125617936\|gb\|EAZ46485.1\|... gi\|150422456, gi... - gi\|254291599\|ref\|ZP_04962388.1\| ribonuclease PH [Vibrio cholerae AM-19226], gi\|197751031\|ref\|YP_0021... gi\|227008319, gi... - gi\|227080431\|ref\|YP_002808982.1\| ribonuclease PH [Vibrio cholerae M66-2], gi\|227008319\|gb\|ACP04531.1... gi\|229356094, gi... - gi\|229506989\|ref\|ZP_04396497.1\| ribonuclease PH [Vibrio cholerae BX 330286], gi\|229356094\|gb\|EEO2101... gi\|11263570 - gi\|11263570\|pir\|\|D82350 ribonuclease PH VC0210 [imported] - Vibrio cholerae (strain N16961 serogroup... gi\|229512476, gi... - gi\|229512476\|ref\|ZP_04401948.1\| ribonuclease PH [Vibrio cholerae TMA 21], gi\|229350475\|gb\|EEO15423.1... gi\|229346732, gi... - gi\|229516306\|ref\|ZP_04405754.1\| ribonuclease PH [Vibrio cholerae RC9], gi\|229346732\|gb\|EEO11702.1\| r... gi\|229527287, gi... - gi\|229527287\|ref\|ZP_04416680.1\| ribonuclease PH [Vibrio cholerae 12129(1)], gi\|229335295\|gb\|EEO00779... gi\|229369152, gi... - gi\|229606497\|ref\|YP_002877145.1\| ribonuclease PH [Vibrio cholerae MJ-1236], gi\|229369152\|gb\|ACQ59575...	273.0	[0..1]	[236..20]
RNPH_COLP3 - Ribonuclease PH OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rph PE=3 SV=1	273.0	[0..1]	[237..1]
gi\|71733440, gi\|... - gi\|71733440\|ref\|YP_272506.1\| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71553...	272.0	[0..2]	[236..57]

Back

Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPSNRTPAQ TRPITITRQF TAHAEGSVLV EFGETKVLCT ASFTEGVPRF LKGQGQGWVT  60
   61 AEYGMLPRST HSRMDREAAR GKQSGRTQEI QRLIGRALRA CVDMKALGEN TIVIDCDVIQ 120
  121 ADGGTRTASI TGACVALVDA LNWARGKGII KSNPLKFLIA AVSVGIYNGE AISDLEYVED 180
  181 SAAETDMNVV MTETGKIIEI QGTAEGEPFT HEELIELLGL AKNSIREIVD VQKAALN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	1r6lA
Description:	Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribonuclease activity	2.56399046328775	bayes_pls_golite062009
polyribonucleotide nucleotidyltransferase activity	1.91194827528589	bayes_pls_golite062009
catalytic activity	1.24889475603062	bayes_pls_golite062009
hydrolase activity	1.07767181032042	bayes_pls_golite062009
exoribonuclease activity	0.98086935928487	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.92844426728299	bayes_pls_golite062009
peptidase activity	0.251251352515662	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: