YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350402, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350402, gi|....

Description	E-value	Query Range	Subject Range
gi\|76795471, gi\|... - gi\|76795471\|ref\|ZP_00777844.1\| 5-carboxymethyl-2-hydroxymuconate delta-isomerase [Thermoanaerobacter... gi\|241885014, gi... - gi\|241902552\|ref\|ZP_04787285.1\| 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Thermoanaerobacte... gi\|166853110, gi... - gi\|167038870\|ref\|YP_001661855.1\| 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Thermoanaerobact... gi\|242256983, gi... - gi\|242256983\|ref\|ZP_04801862.1\| 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Thermoanaerobacte...	228.0	[0..50]	[268..35]
gi\|94310263, gi\|... - gi\|94310263\|ref\|YP_583473.1\| hydratase/decarboxylase [Ralstonia metallidurans CH34], gi\|93354115\|gb\|...	227.0	[0..8]	[268..3]
gi\|110672113 - gi\|110672113\|gb\|ABG82176.1\| BtxK [Ralstonia sp. PHS1]	226.0	[0..8]	[268..1]
gi\|71848008, gi\|... - gi\|71908387\|ref\|YP_285974.1\| hydratase/decarboxylase [Dechloromonas aromatica RCB], gi\|71848008\|gb\|A...	226.0	[0..8]	[269..1]
gi\|27545525 - gi\|27545525\|gb\|AAO19118.1\| 2-oxopent-4-enoate hydrotase [Pseudomonas sp. S-47]	226.0	[0..8]	[269..1]
gi\|37220707 - gi\|37220707\|gb\|AAQ89677.1\| 2-oxopent-4-enoate hydratase [Pseudomonas putida]	226.0	[0..5]	[269..3]
gi\|4104769 - gi\|4104769\|gb\|AAD02151.1\| 2-oxopent-4-enoate hydratase [Pseudomonas stutzeri]	225.0	[0..8]	[269..1]
MHPD3_PSEPU - 2-keto-4-pentenoate hydratase 3 OS=Pseudomonas putida GN=mhpD3 PE=3 SV=1 MHPD_BURXL - 2-keto-4-pentenoate hydratase OS=Burkholderia xenovorans (strain LB400) GN=mhpD PE=3 SV=1	225.0	[0..8]	[273..1]
gi\|70779195 - gi\|70779195\|gb\|AAZ08069.1\| SalF [Pseudomonas pseudoalcaligenes]	225.0	[0..5]	[269..3]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPIDTKAQL ESINAAAQEL AQRRAKGEAG ALLQEALRPK DFSQAFAIQQ TIAQQFSAQG  60
   61 NPIAGWKCLL PTAEKTVVAP IYQQDVYLQT AECPLYPSSK GLARVEPELA FEIGNDLPPR 120
  121 ATPYSEAEID AALGKTRLAL ELIKSRYQNP SEANHFDALA DGLVNQGLWL GPELSTPAEI 180
  181 ETGHFALSVA IAHNDQQQTE TLKKAAVHPN GFPKAGLYWL VNFLSAQGIG LTRGQYVITG 240
  241 SYAGVLDLPL NQTCQFHYGD LGQFSLQFVE KVMK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	1sv6A
Description:	Crystal structure of 2-hydroxypentadienoic acid hydratase from Escherichia Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.80884925307773	bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds	0.42396396220722	bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances	0.28270216359768	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: