YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375343, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375343, gi|....

Description	E-value	Query Range	Subject Range
gi\|160860360, gi... - gi\|160876581\|ref\|YP_001555897.1\| transposase IS4 family protein [Shewanella baltica OS195], gi\|16087...	258.0	[0..1]	[307..1]
gi\|29825732, gi\|... - gi\|38638374\|ref\|NP_943557.1\| putative transposase [Listonella anguillarum], gi\|38638358\|ref\|NP_94359...	256.0	[0..1]	[306..1]
gi\|88793389, gi\|... - gi\|88793389\|ref\|ZP_01109104.1\| transposase [Alteromonas macleodii 'Deep ecotype'], gi\|88775248\|gb\|EA...	256.0	[0..1]	[307..1]
gi\|57472464 - gi\|57472464\|gb\|AAW51291.1\| putative transposase [Vibrio cholerae]	256.0	[0..1]	[307..1]
gi\|37199148, gi\|... - gi\|37680401\|ref\|NP_935010.1\| transposase [Vibrio vulnificus YJ016], gi\|37199148\|dbj\|BAC94981.1\| tran...	253.0	[0..1]	[306..1]
gi\|120560861, gi... - gi\|82740913\|ref\|ZP_00903645.1\| ISSod12, transposase [Shewanella sp. W3-18-1], gi\|82721680\|gb\|EAP5651...	253.0	[0..1]	[307..1]
tr\|Q52T86\|Q52T86... - Putative transposase OS=Vibrio cholerae non-O1/non-O139 PE=4 SV=1 gi\|62632921 - gi\|62632921\|gb\|AAX89423.1\| putative transposase [Vibrio cholerae non-O1/non-O139]	252.0	[0..1]	[307..1]

Back

Predicted Domain #1

Region A:
Residues: [1-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKPRYKTTN WKQYNQTLIN RGSLTFWIDE DVIAKWKAKV EQPEKGRPRV FSDLAITTAL  60
   61 MVKRVLSMPL RALRGFIYSV FKLSDIPLSC PHYTCISKRA KTVNIAFKTK TRGTLEHLAI 120
  121 DSTGLKVYGE GEWEVKKHGT DGKRRVWRKL HIAVDTHSHE IIAAELSLSG VTDAEVMPNL 180
  181 LKQTHRKIRN ISGDGAYDTR ACHEAVRRKQ ALVLIPPREG AALWEQGHPR NLAVSWLQLH 240
  241 GSNKQWKKQY GYHRRSISET TMYRIKQLLG GTLCMRNYNA QVEETNTMIR ALNKLTGLGM 300
  301 PETHYIL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.43
Match:	1muhA
Description:	Transposase inhibitor (Tn5 transposase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.53924789709051	bayes_pls_golite062009
nuclease activity	1.33447740033502	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.23347009562032	bayes_pls_golite062009
hydrolase activity	1.22075366957547	bayes_pls_golite062009
exonuclease activity	1.20458535230258	bayes_pls_golite062009
transposase activity	0.965908684749648	bayes_pls_golite062009
deoxyribonuclease activity	0.330313608754008	bayes_pls_golite062009
ribonuclease activity	0.26323966197813	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	0.248165509716873	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: