YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375069, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	685 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375069, gi|....

Description	E-value	Query Range	Subject Range
gi\|113884550, gi... - gi\|82495913\|ref\|ZP_00881485.1\| 2 ,3 -cyclic-nucleotide 2 -phosphodiesterase [Shewanella sp. MR-4], g...	640.0	[0..1]	[685..1]
gi\|78504330, gi\|... - gi\|78687914\|ref\|ZP_00852646.1\| 2 ,3 -cyclic-nucleotide 2 -phosphodiesterase [Shewanella sp. ANA-3], ...	640.0	[0..1]	[685..1]
gi\|113888538, gi... - gi\|78690212\|ref\|ZP_00854862.1\| 2 ,3 -cyclic-nucleotide 2 -phosphodiesterase [Shewanella sp. MR-7], g...	639.0	[0..1]	[685..1]
gi\|68544304, gi\|... - gi\|68544304\|ref\|ZP_00583962.1\| 2 ,3 -cyclic-nucleotide 2 -phosphodiesterase [Shewanella baltica OS15...	626.0	[0..1]	[681..1]
gi\|113951068, gi... - gi\|160875855\|ref\|YP_001555171.1\| bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleo...	624.0	[0..1]	[681..1]
gi\|120599215, gi... - gi\|120599215\|ref\|YP_963789.1\| bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotid... gi\|77809215, gi\|... - gi\|77815795\|ref\|ZP_00815013.1\| 2 ,3 -cyclic-nucleotide 2 -phosphodiesterase [Shewanella putrefaciens...	620.0	[0..1]	[681..1]
gi\|144978008, gi... - gi\|145629769\|ref\|ZP_01785564.1\| 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunct... gi\|53733342 - gi\|53733342\|ref\|ZP_00156407.2\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e...	617.0	[0..1]	[681..2]
CPDB_HAEIN, CN16... - 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase OS=Haemophilus influenzae GN=cpdB PE=3 ... CPDB_HAEIN - 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase OS=Haemophilus influenzae (strain ATCC ...	615.0	[0..1]	[681..2]
gi\|153222038, gi... - gi\|153222038\|ref\|ZP_01952865.1\| 2`,3`-cyclic-nucleotide 2`-phosphodiesterase [Vibrio cholerae MAK 75... gi\|9657148, gi\|1... - gi\|9657148\|gb\|AAF95703.1\| 2`,3`-cyclic-nucleotide 2`-phosphodiesterase [Vibrio cholerae O1 biovar El... gi\|121587887, gi... - gi\|121587887\|ref\|ZP_01677643.1\| 2`,3`-cyclic-nucleotide 2`-phosphodiesterase [Vibrio cholerae 2740-8... gi\|153819938, gi... - gi\|153819938\|ref\|ZP_01972605.1\| 2`,3`-cyclic-nucleotide 2`-phosphodiesterase [Vibrio cholerae NCTC 8... gi\|227082679, gi... - gi\|227082679\|ref\|YP_002811230.1\| 2,3-cyclic-nucleotide 2-phosphodiesterase [Vibrio cholerae M66-2], ... gi\|11263159 - pir\|\|H82059 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16) VC2562 [similarity] - Vibrio ...	614.0	[0..1]	[681..31]
gi\|68514471, gi\|... - gi\|68547851\|ref\|ZP_00587378.1\| 2 ,3 -cyclic-nucleotide 2 -phosphodiesterase [Shewanella amazonensis ...	612.0	[0..1]	[681..19]

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Predicted Domain #1

Region A:
Residues: [1-621]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKKLLAVM ITAALGVSAC GSDDEPIVQA DLRVLETTDL HTNIMDFNYY SGKVDPTIGL  60
   61 VRTASLIHAA RSESKNSVLV DNGDLLQGSP MGDYMAKVGL QMGDVHPAYK AMNLLDYEVG 120
  121 NIGNHEFNYG LDFLNKSLHG AKFPYINANV YCADDDGCWN GVKKGEHLFT PYIIKEKQII 180
  181 DSEGNNQTIK IGYIGFVPPQ ILLWDKQNLT GKVTVEDIVA TAKKYVPEMK AKGADLIIAI 240
  241 PHSGIGSTEN PGDPMAENAT YALTNVKDIN AIMFGHSHSI FPDAKYADLP NTDVTKGLLN 300
  301 GVPAVMPGRW GDNLGVVDFK LERKDGKWSV LSASTKARPI YDGATKTPLV ERDQEIIDAV 360
  361 AAEHQGTLTF VDQPIGIAAA DMYSFLTLVQ DDPTVQIVSD AQIANVKAKL PEALKNLPVL 420
  421 SASAPFKAGG RHGTTSDADQ YVQVDKGALT FKNAADLYLY PNTMVAVKAT GAELKDWLEC 480
  481 SANQFKQIDP TQTAPQELIN WDGHPTYNFD VLDGLTYKID VTQPSKFDRD CAVVNASANR 540
  541 IVDLRYTDEN GKVFTGEEFA AKEFIVASNN YRAFGGKFAG TGSDHVVLEL PDTNREALAA 600
  601 YITAQSKYNE ATGKYEGMVN P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	1ushA
Description:	5'-NUCLEOTIDASE FROM E. COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoprotein phosphatase activity	6.90309911517124	bayes_pls_golite062009
phosphatase activity	6.28072946025083	bayes_pls_golite062009
phosphoric ester hydrolase activity	6.26557024307779	bayes_pls_golite062009
hydrolase activity	6.0929339222298	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	5.57883033400437	bayes_pls_golite062009
protein serine/threonine phosphatase activity	5.11265802430394	bayes_pls_golite062009
catalytic activity	1.39852585255405	bayes_pls_golite062009
acid phosphatase activity	0.760085320241561	bayes_pls_golite062009
calcium-dependent protein serine/threonine phosphatase activity	0.598330833036731	bayes_pls_golite062009
protein binding	0.420944017984634	bayes_pls_golite062009
binding	0.212656263179037	bayes_pls_golite062009
protein kinase activity	0.0890836633759679	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.0524929216559791	bayes_pls_golite062009
kinase activity	0.0430043477913548	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.39246790349923E-4	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [622-685]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SADYNWDFKT INTNVTLDIR FQTQDSDKAA TFIEANKQRE MKKISKDELG FAVYSINLSQ  60
   61 DKTK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: