YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375058, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375058, gi|....

Description	E-value	Query Range	Subject Range
gi\|221312800 - gi\|221312800\|ref\|ZP_03594605.1\| phosphoribosylaminoimidazole carboxylase catalytic subunit [Bacillus... PURE_BACSU - N5-carboxyaminoimidazole ribonucleotide mutase OS=Bacillus subtilis (strain 168) GN=purE PE=3 SV=1 PURE_BACSU, PUR6... - N5-carboxyaminoimidazole ribonucleotide mutase OS=Bacillus subtilis GN=purE PE=3 SV=1, Phosphoribosy... gi\|221317724 - gi\|221317724\|ref\|ZP_03599018.1\| phosphoribosylaminoimidazole carboxylase catalytic subunit [Bacillus... gi\|221322002 - gi\|221322002\|ref\|ZP_03603296.1\| phosphoribosylaminoimidazole carboxylase catalytic subunit [Bacillus...	228.0	[0..1]	[161..1]
gi\|17933427 - gi\|17933427\|gb\|AAL48287.1\|AF452495_1 aminoimidazole ribonucleotide carboxylase [Vigna unguiculata]	227.0	[0..3]	[162..466]
PURE_THEMA - N5-carboxyaminoimidazole ribonucleotide mutase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DS... gi\|148269614, gi... - gi\|148269614\|ref\|YP_001244074.1\| phosphoribosylaminoimidazole carboxylase, catalytic subunit [Thermo... gi\|214040189, gi... - gi\|254485175\|ref\|ZP_05098389.1\| phosphoribosylaminoimidazole carboxylase, catalytic subunit [Marinit... gi\|170288290, gi... - gi\|170288290\|ref\|YP_001738528.1\| phosphoribosylaminoimidazole carboxylase, catalytic subunit [Thermo... PUR6_THEMA, PURE... - N5-carboxyaminoimidazole ribonucleotide mutase OS=Thermotoga maritima GN=purE PE=1 SV=1, Phosphoribo...	224.0	[0..3]	[162..2]
PUR6_CANGA - Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata GN=ADE2 PE=3 SV=2 PUR6_CANGA - Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 ...	224.0	[0..2]	[162..401]
gi\|34811258 - gi\|34811258\|pdb\|1O4V\|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Mutase Pure (Tm044...	224.0	[0..3]	[162..14]
gi\|120554938, gi... - gi\|77953718\|ref\|ZP_00818123.1\| 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylas...	223.0	[0..1]	[162..1]
PURE_AQUAE - N5-carboxyaminoimidazole ribonucleotide mutase OS=Aquifex aeolicus (strain VF5) GN=purE PE=3 SV=1 PUR6_AQUAE, PURE... - N5-carboxyaminoimidazole ribonucleotide mutase OS=Aquifex aeolicus GN=purE PE=3 SV=1, Phosphoribosyl...	223.0	[0..1]	[162..1]
gi\|18976799, gi\|... - gi\|18976799\|ref\|NP_578156.1\| phosphoribosylaminoimidazole carboxylase catalytic subunit [Pyrococcus ...	222.0	[0..3]	[162..2]
gi\|3342244 - gi\|3342244\|gb\|AAC27548.1\| aminoimidazole ribonucleotide carboxylase [Candida glabrata]	222.0	[0..2]	[162..401]
gi\|52079126, gi\|... - gi\|52784494\|ref\|YP_090323.1\| phosphoribosylaminoimidazole carboxylase catalytic subunit [Bacillus li...	221.0	[0..1]	[161..1]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQALVAVVMG SKSDWPTMEA AAEIMDKLQV PYHVEVVSAH RTPDKLMEFA AGAADRGFKI  60
   61 IIGGAGGAAH LPGMIASKTR LPVLGVPVQS KALSGMDSLL SIVQMPKGIA VGTLAIGTAG 120
  121 AFNAGLLACQ ILANNDVALA ARLDAFREEQ TRAVLDNPDP REV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	1o4vA
Description:	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoribosylaminoimidazole carboxylase activity	12.126616405613	bayes_pls_golite062009
carboxy-lyase activity	8.23768576957333	bayes_pls_golite062009
catalytic activity	1.94758748334979	bayes_pls_golite062009
carbon-carbon lyase activity	0.735133792277863	bayes_pls_golite062009
lyase activity	0.685887227538264	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: