| Protein: | gi|24374817, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 1171 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374817, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
671.0 | [0..9] | [1170..4] |
|
|
663.0 | [0..18] | [1169..1] |
|
|
644.0 | [0..43] | [1169..46] |
|
|
644.0 | [0..18] | [1170..1] |
|
|
642.0 | [0..18] | [1170..1] |
|
Region A: Residues: [1-610] |
1 11 21 31 41 51
| | | | | |
1 MVRSNVGSQC YQKRLTLMSR CYYLSIFLVF WSFIVSAQAK AAYYPLAQQI SSENGLSQNV 60
61 VLALEEDNYG RIWVGTQDGL NLINNNELLV FRRDQAEHRL SGTVITDLTL DQQGRLWVAS 120
121 DVGLDYIDTT TLESHVITLN QSISHMLLHT EQTIFYLSSQ KLYQFQINTG QVQEVKLPEL 180
181 FQIINTLGSY DEQHLLLIGP NGFGVLNLST GDVTPLQPDI PAGTYKASTI SAERIWISQM 240
241 EQGLYSCNLQ GLDCRTYSKA NQKLPTNNIA QIYQQDTALF LATDKGIGRL DLITDKLEWI 300
301 YPHSQNNAYQ ASRIARNLIP AKSGDIFVGT FNGLYRIPNT YKEVQAFNTG IGGYPSNQLA 360
361 VNKVMLNGQE RLVIAQPDKL TLWTLDASIL RLYREYDYPQ GFVPTNLFVD GGDIYLSSLT 420
421 NNNLILTPHN GAFTSLEERF AQLGNVQLFN MNQPQEDIRV FHLLTSMKVY QQRQNKWQLL 480
481 WEKPFLTGSA TAEYWQGRLY VASYQNGLMS ASMDNDWQKP QQWQQHHGLG IAINLFAQKD 540
541 KLYVLTANLG LFQVDSSSPI SITQVSSRDK LASQTLVCAI RDHNGQLILS SHKGLVIFDS 600
601 QQESLIYLSS
|
| Detection Method: |  |
| Confidence: | 7.221849 |
| Match: | 2cn3A |
| Description: | No description for 2cn3A was found. |
|
Region A: Residues: [611-805] |
1 11 21 31 41 51
| | | | | |
1 LQGTHEQEFS QFSCGTLNNV PYFAGERGLT LVFDSQAIKS PAPQITWTHL DVDGLTYRLG 60
61 SSGTGKLTAP EFIRLHFVAT PSDLPKQASY RYRIKSLSDE WVELKSSFIP MINLRPGSYQ 120
121 VELESRDFSG RSSPIALATL EIAPGFWESS LAISLYIFIG LVVIALLVSH RIKADRSLLA 180
181 LEVEKNRHQQ DYSRK
|
| Detection Method: | |
| Confidence: | 2.11 |
| Match: | 1wfoA |
| Description: | The eighth FN3 domain of human sidekick-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.67334813055186 | bayes_pls_golite062009 |
| protein binding | 1.30493021305349 | bayes_pls_golite062009 |
| signal transducer activity | 1.27638082879581 | bayes_pls_golite062009 |
| molecular transducer activity | 1.27638082879581 | bayes_pls_golite062009 |
| receptor activity | 0.578624943275614 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.509477493931933 | bayes_pls_golite062009 |
| catalytic activity | 0.306113740875124 | bayes_pls_golite062009 |
| cytokine binding | 0.0798365598476543 | bayes_pls_golite062009 |
|
Region A: Residues: [806-1044] |
1 11 21 31 41 51
| | | | | |
1 LEHEVQIRTN ELAQKKEEAE EANTAKTRFI AAASHDLKHP IGLIRLQLEQ IEDNKLSYKI 60
61 NTSLSFLEQL VSSIVELSRL DARVLVPQIS SFDLGIFIAK VAEEHLTLAQ SFRLNLMTDI 120
121 KSDVWVASDS LLLRRVIDNI LSNAIKISDP DTSVSLSVCQ ERQHAVIEVI DQGPGMTQQM 180
181 QAELFTPFKR WTSRYQGSGL GLSVVKGIAD LLGISLSIRS TLGEGTQFTL KLPLIDKPT
|
| Detection Method: | |
| Confidence: | 42.0 |
| Match: | 2c2aA |
| Description: | Structure of the entire cytoplasmic portion of a sensor histidine kinase protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1045-1171] |
1 11 21 31 41 51
| | | | | |
1 FSHIEDEAAI FHLGIVEDDY EQLNHLCSSL MVRGIKVSGY RHAISLLQDK TAIFDAILSD 60
61 IDIGTEQDGL AYLVEYRQRL TDAKPLIYMS GNPEAGLRIP SQTDLFFFSK PLKLGKLMWL 120
121 LNQSKRK
|
| Detection Method: | |
| Confidence: | 25.221849 |
| Match: | 1mvoA |
| Description: | PhoP receiver domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| two-component response regulator activity | 7.02872640261738 | bayes_pls_golite062009 |
| signal transducer activity | 4.51666042720644 | bayes_pls_golite062009 |
| molecular transducer activity | 4.51666042720644 | bayes_pls_golite062009 |
| transcription regulator activity | 3.44888100104099 | bayes_pls_golite062009 |
| protein histidine kinase activity | 2.35011582062573 | bayes_pls_golite062009 |
| two-component sensor activity | 2.32303301074957 | bayes_pls_golite062009 |
| phosphotransferase activity, nitrogenous group as acceptor | 2.28838869071567 | bayes_pls_golite062009 |
| binding | 1.22427537074115 | bayes_pls_golite062009 |
| DNA binding | 1.11037597107903 | bayes_pls_golite062009 |
| protein kinase activity | 1.00737355751913 | bayes_pls_golite062009 |
| nucleic acid binding | 0.93151849951839 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.811771244977462 | bayes_pls_golite062009 |
| kinase activity | 0.725824770559857 | bayes_pls_golite062009 |
| transcription factor activity | 0.62886970109503 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.476057209677045 | bayes_pls_golite062009 |
