YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349132, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349132, gi|....

Description	E-value	Query Range	Subject Range
gi\|83726664, gi\|... - gi\|83746711\|ref\|ZP_00943760.1\| Segregation and condensation protein ScpA [Ralstonia solanacearum UW5...	303.0	[0..5]	[260..78]
gi\|15839042, gi\|... - gi\|9107647\|gb\|AAF85250.1\|AE004054_2 conserved hypothetical protein [Xylella fastidiosa 9a5c], ref\|NP... gi\|11360841 - pir\|\|G82554 conserved hypothetical protein XF2451 [imported] - Xylella fastidiosa (strain 9a5c)	301.0	[0..5]	[261..56]
gi\|58426380 - gi\|58426380\|gb\|AAW75417.1\| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331]	297.0	[0..5]	[261..61]
gi\|52856884, gi\|... - gi\|71901986\|ref\|ZP_00684035.1\| Protein of unknown function DUF173 [Xylella fastidiosa Ann-1], gi\|717...	296.0	[0..5]	[261..20]
gi\|71731502, gi\|... - gi\|71898737\|ref\|ZP_00680906.1\| Protein of unknown function DUF173 [Xylella fastidiosa Ann-1], gi\|717... SCPA_XYLFT - Segregation and condensation protein A OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=scp... gi\|53800837, gi\|... - gi\|71276224\|ref\|ZP_00652503.1\| Protein of unknown function DUF173 [Xylella fastidiosa Dixon], gi\|711... gi\|182632186, gi... - gi\|182682076\|ref\|YP_001830236.1\| chromosome segregation and condensation protein ScpA [Xylella fasti... gi\|167965509, gi... - gi\|170730716\|ref\|YP_001776149.1\| segregation and condensation protein A [Xylella fastidiosa M12], gi...	296.0	[0..5]	[261..20]
gi\|77457716, gi\|... - gi\|77457716\|ref\|YP_347221.1\| condensin subunit ScpA [Pseudomonas fluorescens Pf0-1], gi\|77381719\|gb\|...	295.0	[0..3]	[261..12]
gi\|91782344, gi\|... - gi\|91782344\|ref\|YP_557550.1\| condensin subunit ScpA [Burkholderia xenovorans LB400], gi\|91686298\|gb\|...	294.0	[0..4]	[260..30]
gi\|77761175 - gi\|77761175\|ref\|YP_242989.2\| hypothetical protein XC_1906 [Xanthomonas campestris pv. campestris str... gi\|77747876 - gi\|77747876\|ref\|NP_637568.2\| hypothetical protein XCC2212 [Xanthomonas campestris pv. campestris str... gi\|188991363, gi... - gi\|188991363\|ref\|YP_001903373.1\| hypothetical protein xccb100_1968 [Xanthomonas campestris pv. campe...	293.0	[0..5]	[261..20]
gi\|23472594, gi\|... - gi\|66046813\|ref\|YP_236654.1\| hypothetical protein Psyr_3584 [Pseudomonas syringae pv. syringae B728a...	293.0	[0..4]	[261..13]
gi\|77748646 - gi\|77748646\|ref\|NP_642633.2\| hypothetical protein XAC2316 [Xanthomonas axonopodis pv. citri str. 306...	293.0	[0..5]	[261..20]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGTQQSLPL AVVRGQAMTE MPQDLFIPPE ALEVFLESFE GPLDLLLYLI RKQKLDVVDL  60
   61 PISQITAQYL EYIAMLTQAR IELASDYLVM AATLAEIKSR LLLPRMVAED EVEEDPRAQL 120
  121 IRQLKAYEVI KEASQKIDDL PRLERDVFQA TAAPSPNIKP LVIPPDVSLF EIARAFGDVL 180
  181 KRID

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.327902
Match:	PF02616.5
Description:	No description for PF02616.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [185-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYEDHHVKRE QLSTRERMSQ ILAMLNSEDF TPFERLFSVE EGRAGVVVTF LALMELVKEL  60
   61 LVELYQTEPF STIYVKAY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.52
Match:	1w1wE
Description:	Sc Smc1hd:Scc1-C complex, ATPgS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.88909660213693	bayes_pls_golite062009
transcription regulator activity	0.659146952966611	bayes_pls_golite062009
nucleic acid binding	0.526614151800537	bayes_pls_golite062009
DNA binding	0.443743931209129	bayes_pls_golite062009
protein binding	0.215355480170793	bayes_pls_golite062009
sequence-specific DNA binding	0.0198908199689938	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: