YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374531, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	557 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374531, gi|....

Description	E-value	Query Range	Subject Range
gi\|82721524, gi\|... - gi\|82741152\|ref\|ZP_00903880.1\| prophage LambdaSo, type II DNA modification methyltransferase, putati...	421.0	[0..1]	[557..1]
gi\|160862134, gi... - gi\|160876612\|ref\|YP_001555928.1\| C-5 cytosine-specific DNA methylase [Shewanella baltica OS195], gi\|...	388.0	[0..1]	[557..1]
gi\|28870591, gi\|... - gi\|28870591\|ref\|NP_793210.1\| C-5 cytosine-specific DNA methylase family protein [Pseudomonas syringa... tr\|Q87ZJ7\|Q87ZJ7... - C-5 cytosine-specific DNA methylase family protein OS=Pseudomonas syringae pv. tomato (strain DC3000...	326.0	[0..4]	[548..26]
gi\|33568253, gi\|... - gi\|33600653\|ref\|NP_888213.1\| modification methylase [Bordetella bronchiseptica RB50], gi\|33568253\|em...	320.0	[0..5]	[552..15]
Q66BH2\|Q66BH2_YERPS - Putative modification methylase - Yersinia pseudotuberculosis gi\|51596134, gi\|... - gi\|51596134\|ref\|YP_070325.1\| putative modification methylase [Yersinia pseudotuberculosis IP 32953],...	315.0	[0..1]	[557..1]
gi\|83645622, gi\|... - gi\|83645622\|ref\|YP_434057.1\| site-specific DNA methylase [Hahella chejuensis KCTC 2396], gi\|83633665...	305.0	[0..5]	[541..24]
gi\|59800809, gi\|... - gi\|59800809\|ref\|YP_207521.1\| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae FA ... gi\|226512317, gi... - gi\|254493277\|ref\|ZP_05106448.1\| modification methylase NgoFVII [Neisseria gonorrhoeae 1291], gi\|2265...	303.0	[0..2]	[424..15]
MTF7_NEIGO - Modification methylase NgoFVII OS=Neisseria gonorrhoeae GN=ngoFVIIM PE=3 SV=1	303.0	[0..2]	[424..15]

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Predicted Domain #1

Region A:
Residues: [1-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGLIVDNFA GGGGASTGMA WALGRSVDIA INHDQDAIAM HSANHPETLH YCESVFDVDP  60
   61 VQATAGKPVA LAWFSPDCKH FSKAKGTKPV NKEIRGLAWV TIRWAMKVRP RVIMLENVEE 120
  121 FKTWGPLIQC PVTDAMHPCP ERKGETFNAF VSMLSTGVDA DHPALTECVE TLGLLDSAKL 180
  181 IKGLGYKVEF RELRACDYGA PTIRKRLFMI ARCDGQPIVW PQPTHGAPDS EAVKSGKLLP 240
  241 WRTAAECIDW SLPCKSIFGR KKPLAENTLR RIAKGIQRFV IDAKEPFIVP NDVQLAPFIT 300
  301 EHANASSQRN MPVNEPLRTI CAQVKGGHFA VVQPVLEKVN DNIPTFTEWF AKTKNFGGSY 360
  361 EEYVSLYGDD QLTDPVLTAA NICKHYGGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.154902
Match:	1dctA
Description:	DNA methylase HaeIII
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific DNA-methyltransferase (adenine-specific) activity	6.58294643435335	bayes_pls_golite062009
DNA-methyltransferase activity	5.13110226096978	bayes_pls_golite062009
DNA (cytosine-5-)-methyltransferase activity	2.86911702393325	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
methyltransferase activity	1.75500643076741	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	1.71409699782588	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.67663666042395	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
N-methyltransferase activity	1.11696851969974	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.853618803557417	bayes_pls_golite062009
RNA methyltransferase activity	0.817509452491588	bayes_pls_golite062009
protein methyltransferase activity	0.568750701708631	bayes_pls_golite062009
structure-specific DNA binding	0.49459112494682	bayes_pls_golite062009
protein-arginine omega-N symmetric methyltransferase activity	0.332766006729323	bayes_pls_golite062009
rRNA methyltransferase activity	0.230719796976667	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [390-557]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTGPGDDLNN PLPTVTTVDH NALITSHMIK LRGTNIGFPM DEPAHTITAG GLHLGEVRAF  60
   61 FIKYYGNEQD GVACNEPLHT ITTNDRFGLV MIKGEPYQII DIGMRMLEPH ELFACQGFNP 120
  121 EYIINNYNGK SSKKQQVARV GNSVPPQFAE ALTRANLPEL CTQTAEAA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.18
Match:	10mhA
Description:	DNA methylase HhaI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: