YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349025, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349025, gi|....

Description	E-value	Query Range	Subject Range
gi\|146272636, gi... - gi\|98660150\|dbj\|GAA02558.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476765...	148.0	[0..5]	[119..21]
gi\|66770185, gi\|... - gi\|66770185\|ref\|YP_244947.1\| dihydroneopterin aldolase [Xanthomonas campestris pv. campestris str. 8... gi\|21233243, gi\|... - gi\|21233243\|ref\|NP_639160.1\| dihydroneopterin aldolase [Xanthomonas campestris pv. campestris str. A...	145.0	[0..5]	[121..1]
gi\|153819106, gi... - gi\|153819106\|ref\|ZP_01971773.1\| dihydroneopterin aldolase FolB, putative [Vibrio cholerae NCTC 8457]... gi\|125617384 - gi\|125617384\|gb\|EAZ45952.1\| dihydroneopterin aldolase FolB, putative [Vibrio cholerae MO10] gi\|227008595, gi... - gi\|227080707\|ref\|YP_002809258.1\| putative dihydroneopterin aldolase FolB [Vibrio cholerae M66-2], gi... gi\|9654950, gi\|1... - gi\|9654950\|gb\|AAF93692.1\| dihydroneopterin aldolase FolB, putative [Vibrio cholerae O1 biovar El Tor... gi\|126518706, gi... - gi\|153823781\|ref\|ZP_01976448.1\| dihydroneopterin aldolase FolB, putative [Vibrio cholerae B33], gi\|1... gi\|11270209 - pir\|\|C82313 probable dihydroneopterin aldolase FolB VC0524 [imported] - Vibrio cholerae (strain N169... gi\|121590692, gi... - gi\|121590692\|ref\|ZP_01678025.1\| dihydroneopterin aldolase FolB, putative [Vibrio cholerae 2740-80], ... gi\|153223810, gi... - gi\|153223810\|ref\|ZP_01954065.1\| dihydroneopterin aldolase FolB, putative [Vibrio cholerae MAK 757], ... gi\|149739230, gi... - gi\|153826927\|ref\|ZP_01979594.1\| dihydroneopterin aldolase FolB, putative [Vibrio cholerae MZO-2], gi... gi\|121629158, gi... - gi\|121728546\|ref\|ZP_01681568.1\| dihydroneopterin aldolase FolB, putative [Vibrio cholerae V52], gi\|1... gi\|227012350, gi... - gi\|227116900\|ref\|YP_002818796.1\| putative dihydroneopterin aldolase FolB [Vibrio cholerae O395], gi\|...	145.0	[0..5]	[120..13]
gi\|58583747, gi\|... - gi\|58583747\|ref\|YP_202763.1\| dihydroneopterin aldolase [Xanthomonas oryzae pv. oryzae KACC10331], gi...	144.0	[0..5]	[120..24]
gi\|75823728, gi\|... - gi\|75823728\|ref\|ZP_00753212.1\| COG1539: Dihydroneopterin aldolase [Vibrio cholerae RC385], gi\|116216... tr\|A0A085RGT4\|A0... - Dihydroneopterin aldolase OS=Vibrio cholerae GN=folB PE=4 SV=1	143.0	[0..5]	[120..1]
gi\|75825896 - gi\|75825896\|ref\|ZP_00755331.1\| COG1539: Dihydroneopterin aldolase [Vibrio cholerae O395] gi\|75829252, gi\|... - gi\|75829252\|ref\|ZP_00758562.1\| COG1539: Dihydroneopterin aldolase [Vibrio cholerae MO10], gi\|1161881... gi\|75815672 - gi\|75815672\|ref\|ZP_00746169.1\| COG1539: Dihydroneopterin aldolase [Vibrio cholerae V52]	143.0	[0..5]	[120..1]
gi\|140846609, gi... - gi\|145296689\|ref\|YP_001139510.1\| hypothetical protein cgR_2594 [Corynebacterium glutamicum R], gi\|14... gi\|21325465, gi\|... - gi\|62391530\|ref\|YP_226932.1\| dihydroneopterin aldolase [Corynebacterium glutamicum ATCC 13032], gi\|4...	143.0	[0..4]	[122..1]
gi\|150841262, gi... - gi\|75436806\|ref\|ZP_00733347.1\| dihydroneopterin aldolase [Actinobacillus succinogenes 130Z], gi\|7427...	143.0	[0..4]	[118..1]
gi\|75818284, gi\|... - gi\|75818284\|ref\|ZP_00748469.1\| COG1539: Dihydroneopterin aldolase [Vibrio cholerae V51], gi\|11621902...	143.0	[0..5]	[120..1]
gi\|149745162, gi... - gi\|153845021\|ref\|ZP_01993722.1\| dihydroneopterin aldolase [Vibrio parahaemolyticus AQ3810], gi\|14974... gi\|28805394 - gi\|28805394\|dbj\|BAC58674.1\| putative dihydroneopterin aldolase FolB [Vibrio parahaemolyticus RIMD 22... gi\|28897185, gi\|... - gi\|28897185\|ref\|NP_796790.1\| putative dihydroneopterin aldolase FolB [Vibrio parahaemolyticus RIMD 2...	143.0	[0..3]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPETAIIRI KNLRLRTFIG IKDDEIQNRQ DVIVNVVIHY CAAKARNSDN VDDALNYRTI  60
   61 TKKIIELIEN NRFSLLENLT SQTLAIASEH PWVEFASVEI DKPHALRFAD SVSMELCYQK 120
  121 NQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1b9lA
Description:	7,8-dihydroneopterin triphosphate epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
GTP cyclohydrolase I activity	4.32142445441644	bayes_pls_golite062009
cyclohydrolase activity	4.12134839958676	bayes_pls_golite062009
GTP cyclohydrolase activity	3.76376266092452	bayes_pls_golite062009
catalytic activity	2.57832156213163	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	2.13367928146634	bayes_pls_golite062009
dihydroneopterin aldolase activity	2.05627605013559	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.46072575729571	bayes_pls_golite062009
6-pyruvoyltetrahydropterin synthase activity	0.11818000438771	bayes_pls_golite062009
lyase activity	0.0597333135477298	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: