| Protein: | gi|24374087, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 1019 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374087, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
406.0 | [0..154] | [1000..24] |
|
|
400.0 | [0..147] | [992..35] |
|
|
400.0 | [0..147] | [992..31] |
|
|
372.0 | [0..136] | [1015..5] |
|
|
363.0 | [0..178] | [1015..17] |
|
|
362.0 | [0..17] | [778..12] |
|
|
355.0 | [0..186] | [1018..651] |
|
|
355.0 | [0..139] | [1018..12] |
|
|
354.0 | [0..420] | [1019..174] |
|
|
353.0 | [0..194] | [1012..605] |
|
Region A: Residues: [1-158] |
1 11 21 31 41 51
| | | | | |
1 MLAMIKTYNK SIKRHRLLFL LYCITVGLLA NLSVVAIPIA VPLNVGNVAI LVILARLGPL 60
61 WALVCFAFVT YPLPSDIAII LTIVQVILFG FYINQKNSSI IKISIAYVAI VFIANKFLLP 120
121 EAITDNQISL LTFTSLSTAL FIWTIKATNL LLSLYVNN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [159-419] |
1 11 21 31 41 51
| | | | | |
1 EQLRKQSLQH QLSYRVGLYT AIPATLLITL GLNGVTNLHL VKQMAYYQNE VNELNKNIEE 60
61 KLKNYSNKIE TIAKLTDIEV TKRILMQLVS QSPEFISALI TDTNGTVNKF YKKDINDDRI 120
121 AKASVADRAY FYEVKKTMST YISDTFTGRS LGEDQLFAVS TPIIDNNQFN GVLQLAIKLD 180
181 SLLEVFNLPN DSISHRILID NSGKKVWGNN ISGDVGSIWI RPKHSEPMQK AFLEKSLFNP 240
241 LEPIIFSQDA HHLIISNQVG A
|
| Detection Method: | |
| Confidence: | 4.02 |
| Match: | 2p7jA |
| Description: | No description for 2p7jA was found. |
| Term | Confidence | Notes |
| two-component sensor activity | 2.88093868237858 | bayes_pls_golite062009 |
| protein histidine kinase activity | 2.86151216540335 | bayes_pls_golite062009 |
| phosphotransferase activity, nitrogenous group as acceptor | 2.80671328721504 | bayes_pls_golite062009 |
| protein kinase activity | 1.74105675066805 | bayes_pls_golite062009 |
| two-component response regulator activity | 1.62873572477094 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.58981311381645 | bayes_pls_golite062009 |
| kinase activity | 1.5133458700147 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.31628115739307 | bayes_pls_golite062009 |
| signal transducer activity | 1.10204821596482 | bayes_pls_golite062009 |
| molecular transducer activity | 1.10204821596482 | bayes_pls_golite062009 |
| catalytic activity | 0.970922685016416 | bayes_pls_golite062009 |
| transferase activity | 0.839270468560673 | bayes_pls_golite062009 |
| binding | 0.704248066961418 | bayes_pls_golite062009 |
|
Region A: Residues: [420-533] |
1 11 21 31 41 51
| | | | | |
1 TDWKLYFFID TDELTLDFSI YYLLSLLLIT LILEISVQFS KRFVKHYTQA LELLVDYTQQ 60
61 WDGKSTTKKN LNFTQSALEI DTLAHSFVNM QRRVAGAHHA IISTMNEVKL LNEA
|
| Detection Method: | |
| Confidence: | 3.13 |
| Match: | 2f95B |
| Description: | M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [534-789] |
1 11 21 31 41 51
| | | | | |
1 LEERVEKRTK ELEQERDKAN QLAAVKARFL ANMSHEIRTP ITIIKGFTEQ ILPNTQGEVH 60
61 NALCKIEQNT LHLQNVINDI LDAAKIDEGK MTIAEQTVAI IPLLNSLSDS MKFLARTKNL 120
121 TTELNIDIAD IEHIITDPFR LKQILLNFIS NAVKFTPKGT VKLVANITNA DELCIAVIDK 180
181 GIGISDQQAS TLFEAFTQAD SSTSRDFGGT GLGLFISKQL ADAMFIKLHM QSELGVGSCF 240
241 SVTLPESKII KNLTEF
|
| Detection Method: | |
| Confidence: | 47.69897 |
| Match: | 2c2aA |
| Description: | Structure of the entire cytoplasmic portion of a sensor histidine kinase protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [790-1019] |
1 11 21 31 41 51
| | | | | |
1 SKNEKKIEHT TPDWKNYHVL IVDDVEDIRE LIDIYLKDTE IAVDFAQNGQ QAIQLVEKSH 60
61 YDLVILDQQM PIMDGFTAAK AIREFNKSIP LLLLSADILD TEPHQKSPFN KTIAKPFTKN 120
121 QLIETIRLFI VDNSISTKKV NEEDEDELTI EYLHTLPNVL LLLEKLVKCE DRTHLEHELH 180
181 KLKGTSACLG LIAISHCAAN LHNLLKERMI KLNELDDISL AVKNALKEKE
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 1kgsA |
| Description: | PhoB; PhoB receiver domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| two-component response regulator activity | 7.02872640261738 | bayes_pls_golite062009 |
| signal transducer activity | 4.51666042720644 | bayes_pls_golite062009 |
| molecular transducer activity | 4.51666042720644 | bayes_pls_golite062009 |
| transcription regulator activity | 3.44888100104099 | bayes_pls_golite062009 |
| protein histidine kinase activity | 2.35011582062573 | bayes_pls_golite062009 |
| two-component sensor activity | 2.32303301074957 | bayes_pls_golite062009 |
| phosphotransferase activity, nitrogenous group as acceptor | 2.28838869071567 | bayes_pls_golite062009 |
| binding | 1.22427537074115 | bayes_pls_golite062009 |
| DNA binding | 1.11037597107903 | bayes_pls_golite062009 |
| protein kinase activity | 1.00737355751913 | bayes_pls_golite062009 |
| nucleic acid binding | 0.93151849951839 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.811771244977462 | bayes_pls_golite062009 |
| kinase activity | 0.725824770559857 | bayes_pls_golite062009 |
| transcription factor activity | 0.62886970109503 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.476057209677045 | bayes_pls_golite062009 |
