YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348404, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	762 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348404, gi|....

Description	E-value	Query Range	Subject Range
gi\|78688224, gi\|... - gi\|78688224\|ref\|ZP_00852938.1\| Ribonucleoside-diphosphate reductase [Shewanella sp. ANA-3], gi\|78504...	896.0	[0..1]	[762..1]
gi\|56412826, gi\|... - gi\|56412826\|ref\|YP_149901.1\| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica... gi\|62128483, gi\|... - gi\|62180850\|ref\|YP_217267.1\| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica... gi\|197361759, gi... - gi\|197361759\|ref\|YP_002141395.1\| ribonucleotide-diphosphate reductase subunit alpha [Salmonella ente... gi\|205344941, gi... - gi\|205344941\|gb\|EDZ31705.1\| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica... gi\|168466026, gi... - gi\|195631245\|gb\|EDX49805.1\| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica... gi\|205349577, gi... - gi\|205349577\|gb\|EDZ36208.1\| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica...	896.0	[0..1]	[762..1]
lcl\|NC_016856.1_... - [gene=nrdA] [protein=ribonucleotide-diphosphate reductase subunit alpha] [protein_id=YP_005238348.1]... gi\|205329161, gi... - gi\|205329161\|gb\|EDZ15925.1\| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica... RIR1_SALTY - Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Salmonella typhimurium GN=nrdA PE=3 SV=1 RIR1_SALTY - Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Salmonella typhimurium GN=nrdA PE=3 SV=1 RIR1_SALTY - Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Salmonella typhimurium (strain LT2 / SGSC141...	895.0	[0..1]	[762..1]
gi\|113970254, gi... - gi\|82498560\|ref\|ZP_00884048.1\| Ribonucleoside-diphosphate reductase [Shewanella sp. MR-4], gi\|824034...	894.0	[0..1]	[762..1]
gi\|213646445 - gi\|213646445\|ref\|ZP_03376498.1\| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enter... gi\|25285839, gi\|... - gi\|25285839\|pir\|\|AC0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica sub... gi\|213612728 - gi\|213612728\|ref\|ZP_03370554.1\| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enter... gi\|213424146 - gi\|213424146\|ref\|ZP_03357024.1\| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enter... gi\|213161594 - gi\|213161594\|ref\|ZP_03347304.1\| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enter... gi\|29136728, gi\|... - gi\|29141102\|ref\|NP_804444.1\| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica... gi\|16761203 - gi\|16761203\|ref\|NP_456820.1\| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica...	891.0	[0..1]	[762..1]
gi\|218361565, gi... - gi\|218554797\|ref\|YP_002387710.1\| ribonucleotide-diphosphate reductase subunit alpha [Escherichia col... gi\|75259700, gi\|... - gi\|75259700\|ref\|ZP_00731002.1\| COG0209: Ribonucleotide reductase, alpha subunit [Escherichia coli E2... gi\|193068151, gi... - gi\|75238025\|ref\|ZP_00722030.1\| COG0209: Ribonucleotide reductase, alpha subunit [Escherichia coli E1... gi\|75230376, gi\|... - gi\|75230376\|ref\|ZP_00716866.1\| COG0209: Ribonucleotide reductase, alpha subunit [Escherichia coli B7... gi\|194427206, gi... - gi\|75211645\|ref\|ZP_00711724.1\| COG0209: Ribonucleotide reductase, alpha subunit [Escherichia coli B1... gi\|209919686, gi... - gi\|209919686\|ref\|YP_002293770.1\| ribonucleotide-diphosphate reductase subunit alpha [Escherichia col...	891.0	[0..1]	[762..1]
gi\|114047557, gi... - gi\|78691890\|ref\|ZP_00856478.1\| Ribonucleoside-diphosphate reductase [Shewanella sp. MR-7], gi\|785086...	890.0	[0..1]	[762..1]
gi\|24113614, gi\|... - gi\|24113614\|ref\|NP_708124.1\| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 2... gi\|30041923, gi\|... - gi\|30063668\|ref\|NP_837839.1\| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 2...	890.0	[0..1]	[762..1]
gi\|166211738, gi... - gi\|166211738\|ref\|ZP_02237773.1\| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis... gi\|167050280, gi... - gi\|167400331\|ref\|ZP_02305844.1\| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis... gi\|165938388, gi... - gi\|89104021\|ref\|ZP_01176577.1\| COG0209: Ribonucleotide reductase, alpha subunit [Yersinia pestis bio... gi\|166962477, gi... - gi\|167419736\|ref\|ZP_02311489.1\| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis... gi\|108778838, gi... - gi\|108806925\|ref\|YP_650841.1\| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis An... gi\|167423852, gi... - gi\|167423852\|ref\|ZP_02315605.1\| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis... gi\|169751606, gi... - gi\|170025072\|ref\|YP_001721577.1\| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudo... gi\|186697687, gi... - gi\|186894661\|ref\|YP_001871773.1\| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudo... gi\|25285842 - pir\|\|AI0148 ribonucleoside-diphosphate reductase (EC 1.17.4.1) alpha chain [imported] - Yersinia pes... gi\|45440762, gi\|... - gi\|45440762\|ref\|NP_992301.1\| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis bio... gi\|21959883, gi\|... - gi\|22126851\|ref\|NP_670274.1\| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis KIM... gi\|229903353, gi... - gi\|229903353\|ref\|ZP_04518466.1\| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis ... gi\|16121505, gi\|... - gi\|218928373\|ref\|YP_002346248.1\| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis... gi\|162420851, gi... - gi\|162420851\|ref\|YP_001605846.1\| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis... gi\|165924688, gi... - gi\|165924688\|ref\|ZP_02220520.1\| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis... gi\|229841158, gi... - gi\|229841158\|ref\|ZP_04461317.1\| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis ... gi\|165991289, gi... - gi\|166009893\|ref\|ZP_02230791.1\| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis... gi\|229689610, gi... - gi\|229843263\|ref\|ZP_04463409.1\| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis ... gi\|77632212, gi\|... - gi\|77632212\|ref\|ZP_00794798.1\| COG0209: Ribonucleotide reductase, alpha subunit [Yersinia pseudotube... gi\|229704006, gi... - gi\|229894121\|ref\|ZP_04509307.1\| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis ... gi\|149366795, gi... - gi\|149366795\|ref\|ZP_01888829.1\| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis ... gi\|145599748, gi... - gi\|145599748\|ref\|YP_001163824.1\| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis...	890.0	[0..1]	[762..1]
gi\|188492275, gi... - gi\|75512710\|ref\|ZP_00735212.1\| COG0209: Ribonucleotide reductase, alpha subunit [Escherichia coli 53...	889.0	[0..1]	[762..1]

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Predicted Domain #1

Region A:
Residues: [1-762]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNMTVTKR CGARETIDLD KIHRVITWAA KGLKNVSVSE VELRTHLQFF DGIPTEAIHE  60
   61 TIIKSAADLI SPESPDYQFL AARLAVFHLR KKAFGQFEPP KLYDHVTKLV ELGKYDMHIL 120
  121 QDYTREELDI MDTYIDHWRD MNFSYAAVKQ LEGKYLVQNR VTHEIYESAQ FLYILVAACL 180
  181 FARYPKETRL QYVKDFYDAV STFKISLPTP IMAGVRTPTR QFSSCVLIEC GDSLDSINAT 240
  241 ASSIVKYVSQ RAGIGINAGR IRALGSPIRG GEAFHTGCLP FYKYFQTAVK SCSQGGVRGG 300
  301 AATLFYPIWH LEVESLLVLK NNRGVEDNRI RHLDYGVQLN KLMYQRLIKG ESISLFSPSD 360
  361 VPGLYDAFFE DQAEFERLYL QYEQDSSIRK KTLKAVDLFS LMMQERASTG RIYIQNVDHC 420
  421 NTHSPFDSKV APIRQSNLCL EIALPTKPLN NIDDPNGEIA LCTLSALNLG TITDLAELEP 480
  481 LADLAVRALD NLLDYQDYPI KAAQISSMNR RTLGIGVINF ANYLAKNGMK YSDGSANNLT 540
  541 HKTFEAIQFY LLKASMNLAK EKGACPLFNE TTYAQGILPI DTYKRDLDKI CSEPLHLDWE 600
  601 ALRSDIKEYG LRNSTLSALM PSETSSQISN ATNGIEPPRG LISVKASKDG QLKQVVPDFD 660
  661 TLKNNYELLW QMPSNEGYLQ LVGIMQKFVD QAISANTNYD PARFEGRKVP MQTLLKDLLN 720
  721 AYKLGVKTLY YHNTRDGASD QHDDITNIEK EDDGCAGGAC KI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2r1rA
Description:	R1 subunit of ribonucleotide reductase, N-terminal domain; R1 subunit of ribonucleotide reductase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	14.6351774763867	bayes_pls_golite062009
ribonucleoside-diphosphate reductase activity	14.1611243981741	bayes_pls_golite062009
oxidoreductase activity, acting on CH or CH2 groups	13.9924528137471	bayes_pls_golite062009
class I ribonucleotide reductase activity	8.57315924653024	bayes_pls_golite062009
catalytic activity	1.95058695475279	bayes_pls_golite062009
binding	1.06379703329768	bayes_pls_golite062009
protein binding	0.34900723085369	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: