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Protein Overview: gi|24348404, gi|...

General Information:
Name(s) found: gi|24373962 [NCBI NR]
gi|24348404 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24373962|ref|NP_718005.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348404|gb|AAN55449.1|AE015682_4 ribonucleoside-diphosphate reductase, alpha subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 762 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: 2'-deoxyribonucleotide biosynthetic process [ISSLink to PubMed article]
    Molecular Function: ribonucleoside-diphosphate reductase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNMTVTKR CGARETIDLD KIHRVITWAA KGLKNVSVSE VELRTHLQFF DGIPTEAIHE  60
   61 TIIKSAADLI SPESPDYQFL AARLAVFHLR KKAFGQFEPP KLYDHVTKLV ELGKYDMHIL 120
  121 QDYTREELDI MDTYIDHWRD MNFSYAAVKQ LEGKYLVQNR VTHEIYESAQ FLYILVAACL 180
  181 FARYPKETRL QYVKDFYDAV STFKISLPTP IMAGVRTPTR QFSSCVLIEC GDSLDSINAT 240
  241 ASSIVKYVSQ RAGIGINAGR IRALGSPIRG GEAFHTGCLP FYKYFQTAVK SCSQGGVRGG 300
  301 AATLFYPIWH LEVESLLVLK NNRGVEDNRI RHLDYGVQLN KLMYQRLIKG ESISLFSPSD 360
  361 VPGLYDAFFE DQAEFERLYL QYEQDSSIRK KTLKAVDLFS LMMQERASTG RIYIQNVDHC 420
  421 NTHSPFDSKV APIRQSNLCL EIALPTKPLN NIDDPNGEIA LCTLSALNLG TITDLAELEP 480
  481 LADLAVRALD NLLDYQDYPI KAAQISSMNR RTLGIGVINF ANYLAKNGMK YSDGSANNLT 540
  541 HKTFEAIQFY LLKASMNLAK EKGACPLFNE TTYAQGILPI DTYKRDLDKI CSEPLHLDWE 600
  601 ALRSDIKEYG LRNSTLSALM PSETSSQISN ATNGIEPPRG LISVKASKDG QLKQVVPDFD 660
  661 TLKNNYELLW QMPSNEGYLQ LVGIMQKFVD QAISANTNYD PARFEGRKVP MQTLLKDLLN 720
  721 AYKLGVKTLY YHNTRDGASD QHDDITNIEK EDDGCAGGAC KI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..762] PSI-BLAST 1000.0 R1 subunit of ribonucleotide reductase, N-terminal domain; R1 subunit of ribonucleotide reductase, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor
    		•  14.6351774763867 bayes_pls_golite062009
  • ribonucleoside-diphosphate reductase activity
    		•  14.1611243981741 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH or CH2 groups
    		•  13.9924528137471 bayes_pls_golite062009
  • class I ribonucleotide reductase activity
    		•  8.57315924653024 bayes_pls_golite062009
  • catalytic activity
    		•  1.95058695475279 bayes_pls_golite062009
  • binding
    		•  1.06379703329768 bayes_pls_golite062009
  • protein binding
    		•  0.34900723085369 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle