YRC Public Data Repository - Protein Structure Prediction

Protein:	PYRF_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYRF_SHEON.

Description	E-value	Query Range	Subject Range
PYRF_VIBC3 - Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical O...	243.0	[0..1]	[231..1]
gi\|116187749, gi... - gi\|75828740\|ref\|ZP_00758086.1\| COG0284: Orotidine-5'-phosphate decarboxylase [Vibrio cholerae MO10],... gi\|229351734, gi... - gi\|229511769\|ref\|ZP_04401248.1\| orotidine 5'-phosphate decarboxylase [Vibrio cholerae B33], gi\|22935... gi\|121630524, gi... - gi\|75816131\|ref\|ZP_00746610.1\| COG0284: Orotidine-5'-phosphate decarboxylase [Vibrio cholerae V52], ... PYRF_VIBCM - Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=pyrF PE=3 SV=1 gi\|229507993, gi... - gi\|229507993\|ref\|ZP_04397498.1\| orotidine 5'-phosphate decarboxylase [Vibrio cholerae BX 330286], gi... gi\|229518907, gi... - gi\|229518907\|ref\|ZP_04408350.1\| orotidine 5'-phosphate decarboxylase [Vibrio cholerae RC9], gi\|22934... gi\|229607539, gi... - gi\|229607539\|ref\|YP_002878187.1\| orotidine 5'-phosphate decarboxylase [Vibrio cholerae MJ-1236], gi\|... PYRF_VIBCH - Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inab... PYRF_VIBCH - Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae GN=pyrF PE=1 SV=1 gi\|121546724, gi... - gi\|121591429\|ref\|ZP_01678708.1\| orotidine 5`-phosphate decarboxylase [Vibrio cholerae 2740-80], gi\|1... gi\|153225057, gi... - gi\|153225057\|ref\|ZP_01954684.1\| orotidine 5`-phosphate decarboxylase [Vibrio cholerae MAK 757], gi\|1... gi\|153819859, gi... - gi\|153819859\|ref\|ZP_01972526.1\| orotidine 5`-phosphate decarboxylase [Vibrio cholerae NCTC 8457], gi...	243.0	[0..1]	[231..1]
gi\|69156212, gi\|... - gi\|91793113\|ref\|YP_562764.1\| orotidine 5'-phosphate decarboxylase [Shewanella denitrificans OS217], ...	237.0	[0..1]	[231..1]
gi\|91188854, gi\|... - gi\|91226891\|ref\|ZP_01261488.1\| orotidine 5'-phosphate decarboxylase [Vibrio alginolyticus 12G01], gi...	235.0	[0..1]	[230..1]
gi\|151937856, gi... - gi\|75856152\|ref\|ZP_00763785.1\| COG0284: Orotidine-5'-phosphate decarboxylase [Vibrio sp. Ex25], gi\|2...	234.0	[0..1]	[230..1]
PYRF_VIBF1 - Orotidine 5'-phosphate decarboxylase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=pyrF PE=3 SV... PYRF_VIBFM - Orotidine 5'-phosphate decarboxylase OS=Vibrio fischeri (strain MJ11) GN=pyrF PE=3 SV=1	234.0	[0..1]	[226..1]
PYRF_VIBPA - Orotidine 5'-phosphate decarboxylase OS=Vibrio parahaemolyticus GN=pyrF PE=3 SV=1 PYRF_VIBPA - Orotidine 5'-phosphate decarboxylase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)...	234.0	[0..1]	[230..1]
PYRF_PASMU - Orotidine 5'-phosphate decarboxylase OS=Pasteurella multocida GN=pyrF PE=3 SV=1 PYRF_PASMU - Orotidine 5'-phosphate decarboxylase OS=Pasteurella multocida (strain Pm70) GN=pyrF PE=3 SV=1	232.0	[0..2]	[230..1]
PYRF_VIBVU - Orotidine 5'-phosphate decarboxylase OS=Vibrio vulnificus GN=pyrF PE=3 SV=1 PYRF_VIBVU - Orotidine 5'-phosphate decarboxylase OS=Vibrio vulnificus (strain CMCP6) GN=pyrF PE=3 SV=1	232.0	[0..1]	[230..1]
PYRF_VIBVY - Orotidine 5'-phosphate decarboxylase OS=Vibrio vulnificus (strain YJ016) GN=pyrF PE=3 SV=1	232.0	[0..1]	[230..1]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKPILVAL DYDNKNHALQ LIDQLDPNMC RLKVGKEMFT LFGPQLVKDI HERGFDLFLD  60
   61 LKFHDIPNTV AKAVTAAAEL GVWMTNVHAS GGLAMMEAAK KALQPYGKEA PMLIAVTVLT 120
  121 SMSDEDLKLI GIDVPAFEHV QRLAKLTKQA ELDGVVCSAQ EASILKSLLG QDFKLITPGI 180
  181 RPVGSDVGDQ HRVMTPPEAL AAGADYLVIG RPITKATDPL AALQAIHQSL V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	1eixA
Description:	Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
orotidine-5'-phosphate decarboxylase activity	2.87717797280068	bayes_pls_golite062009
catalytic activity	2.44231061702877	bayes_pls_golite062009
ribulose-phosphate 3-epimerase activity	0.982517927791965	bayes_pls_golite062009
carboxy-lyase activity	0.83446736141993	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	0.108467338662618	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: