YRC Public Data Repository - Protein Structure Prediction

Protein:	ASTE_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	344 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASTE_SHEON.

Description	E-value	Query Range	Subject Range
ASTE_SHESA - Succinylglutamate desuccinylase OS=Shewanella sp. (strain ANA-3) GN=astE PE=3 SV=1	315.0	[0..1]	[344..1]
ASTE_SHESM - Succinylglutamate desuccinylase OS=Shewanella sp. (strain MR-4) GN=astE PE=3 SV=1	313.0	[0..1]	[344..1]
ASTE_SHESR - Succinylglutamate desuccinylase OS=Shewanella sp. (strain MR-7) GN=astE PE=3 SV=1	312.0	[0..1]	[344..1]
ASTE_VIBVY - Succinylglutamate desuccinylase OS=Vibrio vulnificus (strain YJ016) GN=astE PE=3 SV=1	302.0	[0..1]	[335..1]
ASTE_VIBVU - Succinylglutamate desuccinylase OS=Vibrio vulnificus (strain CMCP6) GN=astE PE=3 SV=2 ASTE_VIBVU - Succinylglutamate desuccinylase OS=Vibrio vulnificus GN=astE PE=3 SV=2	301.0	[0..1]	[335..1]
ASTE_SALCH - Succinylglutamate desuccinylase OS=Salmonella choleraesuis (strain SC-B67) GN=astE PE=3 SV=1 ASTE_SALCH - Succinylglutamate desuccinylase OS=Salmonella choleraesuis GN=astE PE=3 SV=1 ASTE_SALCH - Succinylglutamate desuccinylase OS=Salmonella choleraesuis GN=astE PE=3 SV=1	300.0	[0..10]	[338..3]
ASTE_PSE14 - Succinylglutamate desuccinylase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) G...	298.0	[0..5]	[343..1]
gi\|91223939, gi\|... - gi\|91223939\|ref\|ZP_01259203.1\| succinylglutamate desuccinylase [Vibrio alginolyticus 12G01], gi\|9119...	298.0	[0..1]	[335..1]
ASTE_SHEB9 - Succinylglutamate desuccinylase OS=Shewanella baltica (strain OS195) GN=astE PE=3 SV=1	298.0	[0..1]	[344..1]
gi\|214003063 - gi\|214003063\|ref\|ZP_03413798.1\| succinylglutamate desuccinylase [Salmonella enterica subsp. enterica... ASTE_SALTI - Succinylglutamate desuccinylase OS=Salmonella typhi GN=astE PE=3 SV=1 gi\|213427494 - gi\|213427494\|ref\|ZP_03360244.1\| succinylglutamate desuccinylase [Salmonella enterica subsp. enterica... gi\|29137279, gi\|... - gi\|29141651\|ref\|NP_804993.1\| succinylglutamate desuccinylase [Salmonella enterica subsp. enterica se... gi\|213583599 - gi\|213583599\|ref\|ZP_03365425.1\| succinylglutamate desuccinylase [Salmonella enterica subsp. enterica... gi\|213610059 - gi\|213610059\|ref\|ZP_03369885.1\| succinylglutamate desuccinylase [Salmonella enterica subsp. enterica... gi\|213852613 - gi\|213852613\|ref\|ZP_03382145.1\| succinylglutamate desuccinylase [Salmonella enterica subsp. enterica... ASTE_SALTI - Succinylglutamate desuccinylase OS=Salmonella typhi GN=astE PE=3 SV=1 gi\|16760588 - gi\|16760588\|ref\|NP_456205.1\| succinylglutamate desuccinylase [Salmonella enterica subsp. enterica se... gi\|213162969 - gi\|213162969\|ref\|ZP_03348679.1\| succinylglutamate desuccinylase [Salmonella enterica subsp. enterica... gi\|213423775 - gi\|213423775\|ref\|ZP_03356755.1\| succinylglutamate desuccinylase [Salmonella enterica subsp. enterica...	297.0	[0..10]	[338..3]

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Predicted Domain #1

Region A:
Residues: [1-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQALLDSKD FLALTLANPQ TLGDEFSFTL GEHTRVNVWD TGVIVFEPAQ PQGKDVILSC  60
   61 GVHGNETAPI ELCNTLIKQL LQQKIIAKQR TLFLIGNPLA INNGTRIIDE NMNRLFSGEH 120
  121 SNPPGLVNPE RLRAKKLETY VDRFFKAAAA GRQRIHYDLH TAMRASKHEK FAIYPYRPGR 180
  181 AYSAEQIMFL AASGVDTVLF HHEPTTTFSY FSSEQYGADA FTIELGKVYP MGQNDMTRFI 240
  241 AAQEMFTRLI TDKPLQLESF STDKVNLYQV CRVINKHFDD FEFTFATDVE NFRAFPKGFV 300
  301 LAREGGQEIK VEQEVESIVF PNAKVPIGNR TVICLIPSVA PDVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.30103
Match:	1yw6A
Description:	Crystal Structure of Succinylglutamate Desuccinylase from Escherichia coli, Northeast Structural Genomics Target ET72.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.7824202462173	bayes_pls_golite062009
catalytic activity	1.76936806579991	bayes_pls_golite062009
peptidase activity	1.69812537802871	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	1.41029347724469	bayes_pls_golite062009
exopeptidase activity	0.82896398764377	bayes_pls_golite062009
succinylglutamate desuccinylase activity	0.46025450502966	bayes_pls_golite062009
carboxypeptidase activity	0.215630276604929	bayes_pls_golite062009
N-formylglutamate deformylase activity	0.17769913093601	bayes_pls_golite062009
metallopeptidase activity	0.1586028474273	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: