YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348162, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	516 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348162, gi|....

Description	E-value	Query Range	Subject Range
gi\|194562900, gi... - gi\|84362315\|ref\|ZP_00986943.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ...	768.0	[0..10]	[516..1]
gi\|23105040 - ref\|ZP_00091498.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-termina... gi\|67086112, gi\|... - gi\|67156353\|ref\|ZP_00417946.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	766.0	[0..10]	[512..1]
gi\|134139536, gi... - gi\|67549752\|ref\|ZP_00427601.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	766.0	[0..5]	[516..7]
gi\|77460673, gi\|... - gi\|77460673\|ref\|YP_350180.1\| fumarase [Pseudomonas fluorescens Pf0-1], gi\|77384676\|gb\|ABA76189.1\| pu...	765.0	[0..10]	[514..1]
gi\|46311492, gi\|... - gi\|78066992\|ref\|YP_369761.1\| fumarase [Burkholderia sp. 383], gi\|77967737\|gb\|ABB09117.1\| fumarase [B...	763.0	[0..10]	[516..1]
gi\|72119332, gi\|... - gi\|73541919\|ref\|YP_296439.1\| fumarase [Ralstonia eutropha JMP134], gi\|72119332\|gb\|AAZ61595.1\| fumara...	763.0	[0..10]	[516..1]
gi\|116648304, gi... - gi\|67664674\|ref\|ZP_00461946.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro... gi\|67095365, gi\|... - gi\|67657097\|ref\|ZP_00454477.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	763.0	[0..10]	[516..1]
gi\|194558696, gi... - gi\|84355180\|ref\|ZP_00980069.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ...	763.0	[0..10]	[516..1]
gi\|70732126, gi\|... - gi\|70732126\|ref\|YP_261882.1\| fumarate hydratase, class I, putative [Pseudomonas fluorescens Pf-5], g...	763.0	[0..10]	[514..1]
gi\|153839220, gi... - gi\|153839220\|ref\|ZP_01991887.1\| fumarate hydratase, class I [Vibrio parahaemolyticus AQ3810], gi\|149... gi\|28806865, gi\|... - gi\|28898647\|ref\|NP_798252.1\| fumarate hydratase, class I [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|91224279, gi\|... - gi\|91224279\|ref\|ZP_01259541.1\| fumarate hydratase, class I [Vibrio alginolyticus 12G01], gi\|91190621... gi\|254228146, gi... - gi\|75856978\|ref\|ZP_00764598.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ... gi\|28806865 - gi\|28806865\|dbj\|BAC60136.1\| fumarate hydratase, class I [Vibrio parahaemolyticus RIMD 2210633]	763.0	[0..10]	[514..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHHETSEN VVIKQADFIE SVADALQYIS YYHPKDFVDA MSEAYEREQS AAAKDAIAQI  60
   61 LINSRMSAEG KRPLCQDTGI VTTFVKVGMG VKWDKTDMTI QQMVDEGVRR AYTN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.763	N/A	N/A	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.580	N/A	N/A	d.110.4	SNARE-like
View	Download	0.546	N/A	N/A	a.118.12	Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
View	Download	0.544	N/A	N/A	a.72.1	Functional domain of the splicing factor Prp18
View	Download	0.520	N/A	N/A	a.19.1	Fertilization protein

Predicted Domain #2

Region A:
Residues: [115-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDNPLRASIV ADPAGSRKNT KDNTPSVVHI DMVPGNHVEV AIAAKGGGSE NKAKMVMLNP  60
   61 SDDIAAWVEK TLPTMGAGWC PPGMLGIGIG GTAEKAAVLA KEALMESVDI HELMARGAQT 120
  121 TEEKLRLDIF ERANNLGIGA QGLGGLTTVL DVKIKSAPTH AASKPVVMIP NCAATRHVHF 180
  181 HLDGTGPADL APP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [308-516]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLSDWPEITR EVGSDVRRVN LDTVTQADIE QWQSGETLLL SGKMLTGRDA AHKRIQSLIE  60
   61 SGEGLPEGVD FTGKFIYYVG PVDPVGNEVV GPAGPTTATR MDKFTDLMLD KTGLMGMIGK 120
  121 AERGPATVES IKKHKAVYLM AVGGAAYLVS KAIKKSRVVA FADLGMEAIY EFDVQDMPVT 180
  181 VAVDSNGVNA HETGPAIWKV NIANANAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	2isbA
Description:	No description for 2isbA was found.

Predicted functions:

Term	Confidence	Notes
fumarate hydratase activity	4.07646355358082	bayes_pls_golite062009
catalytic activity	1.02123395223799	bayes_pls_golite062009
hydro-lyase activity	0.556078290190932	bayes_pls_golite062009
carbon-oxygen lyase activity	0.338858403016763	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: