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Protein Overview: gi|24348162, gi|...

General Information:
Name(s) found: gi|24373776 [NCBI NR]
gi|24348162 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373776|ref|NP_717819.1| fumarate hydratase, class I, anaerobic, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348162|gb|AAN55263.1|AE015664_6 fumarate hydratase, class I, anaerobic, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 516 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tricarboxylic acid cycle [ISSLink to PubMed article]
    Molecular Function: fumarate hydratase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHHETSEN VVIKQADFIE SVADALQYIS YYHPKDFVDA MSEAYEREQS AAAKDAIAQI  60
   61 LINSRMSAEG KRPLCQDTGI VTTFVKVGMG VKWDKTDMTI QQMVDEGVRR AYTNPDNPLR 120
  121 ASIVADPAGS RKNTKDNTPS VVHIDMVPGN HVEVAIAAKG GGSENKAKMV MLNPSDDIAA 180
  181 WVEKTLPTMG AGWCPPGMLG IGIGGTAEKA AVLAKEALME SVDIHELMAR GAQTTEEKLR 240
  241 LDIFERANNL GIGAQGLGGL TTVLDVKIKS APTHAASKPV VMIPNCAATR HVHFHLDGTG 300
  301 PADLAPPSLS DWPEITREVG SDVRRVNLDT VTQADIEQWQ SGETLLLSGK MLTGRDAAHK 360
  361 RIQSLIESGE GLPEGVDFTG KFIYYVGPVD PVGNEVVGPA GPTTATRMDK FTDLMLDKTG 420
  421 LMGMIGKAER GPATVESIKK HKAVYLMAVG GAAYLVSKAI KKSRVVAFAD LGMEAIYEFD 480
  481 VQDMPVTVAV DSNGVNAHET GPAIWKVNIA NANAKA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] MSA 1.061977 View MSA. No confident structure predictions are available.
    2 View Details [115..307] MSA 1.061951 View MSA. No confident structure predictions are available.
    3 View Details [308..516] PSI-BLAST 60.522879 No description for 2isbA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • fumarate hydratase activity
    		•  4.07646355358082 bayes_pls_golite062009
  • catalytic activity
    		•  1.02123395223799 bayes_pls_golite062009
  • hydro-lyase activity
    		•  0.556078290190932 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  0.338858403016763 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle