YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347717, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347717, gi|....

Description	E-value	Query Range	Subject Range
DCAM_RAT - S-adenosylmethionine decarboxylase proenzyme OS=Rattus norvegicus GN=Amd1 PE=2 SV=3	431.0	[0..2]	[297..5]
DCAM1_MOUSE - S-adenosylmethionine decarboxylase proenzyme 1 OS=Mus musculus GN=Amd1 PE=1 SV=1 gi\|55250462 - gb\|AAH85966.1\| Unknown (protein for MGC:97920) [Xenopus laevis]	430.0	[0..2]	[297..5]
gi\|7436597, gi\|2... - pir\|\|T01934 adenosylmethionine decarboxylase (EC 4.1.1.50) - common tobacco, gi\|2687584\|gb\|AAB88854....	430.0	[0..4]	[310..12]
DCAM_MESAU - S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1	429.0	[0..2]	[297..5]
gi\|114608866, gi... - gi\|114608868\|ref\|XP_001155870.1\| PREDICTED: S-adenosylmethionine decarboxylase 1 isoform 9 [Pan trog... gi\|123994869 - gi\|123994869\|gb\|ABM85036.1\| adenosylmethionine decarboxylase 1 [synthetic construct] AMD1 - adenosylmethionine decarboxylase 1	429.0	[0..2]	[297..5]
DCAM_NICSY - S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1	429.0	[0..4]	[310..12]
DCAM2_MUSSP - S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1	429.0	[0..2]	[297..5]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFFEGAEKK LEISLTPKAV SLRQRGLAFW TTLVACANAE ILSKISNKDC DAYLLSESSL  60
   61 FVWDNKILIL TCGNSTLIEA ACYFINSLGS EHIAALCYQR KNEYQAQLQS TTFAEDIAQL 120
  121 RTLISGQAFR VGHLDAHHHY VFCAAGVPIT QVGTRLELMM YHIRGELAEY LNDPVQTEQG 180
  181 IVHRLKLTQL FPEFQLDMHC FKPTGFSLNA IQGSHYFTLH ITPSAGQGEH SYVSFETNLN 240
  241 LAAYPYPVVA QLISLFAPSS WDLVSVNQLI STAGLSEHLC VGHCSITTEQ GNYIDFNHYQ 300
  301 QRQTEELFPK FM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	1msvA
Description:	S-adenosylmethionine decarboxylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
adenosylmethionine decarboxylase activity	6.84247797666468	bayes_pls_golite062009
carbon-carbon lyase activity	3.32152822935886	bayes_pls_golite062009
carboxy-lyase activity	2.72149419399869	bayes_pls_golite062009
catalytic activity	1.62887824627302	bayes_pls_golite062009
lyase activity	1.49916840552571	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: