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View Structure Prediction Details

Protein: DEOC_SHEON
Organism: Shewanella oneidensis MR-1
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEOC_SHEON.

Description E-value Query
Range		 Subject
Range
DEOC_SHESA - Deoxyribose-phosphate aldolase OS=Shewanella sp. (strain ANA-3) GN=deoC PE=3 SV=1
 233.0 [0..1] [256..1]
DEOC_SHESR - Deoxyribose-phosphate aldolase OS=Shewanella sp. (strain MR-7) GN=deoC PE=3 SV=1
 233.0 [0..1] [256..1]
DEOC_SHESM - Deoxyribose-phosphate aldolase OS=Shewanella sp. (strain MR-4) GN=deoC PE=3 SV=1
 233.0 [0..1] [256..1]
DEOC_SHEFN - Deoxyribose-phosphate aldolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=deoC PE=3 SV=1
 232.0 [0..1] [256..1]
DEOC_PYRKO - Probable deoxyribose-phosphate aldolase OS=Pyrococcus kodakaraensis GN=deoC PE=3 SV=1
DEOC_THEKO - Deoxyribose-phosphate aldolase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)...
 232.0 [0..9] [224..4]
DEOC_SHELP - Deoxyribose-phosphate aldolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=deoC PE=3 SV=1
 232.0 [0..1] [256..1]
DEOC_SHESW - Deoxyribose-phosphate aldolase OS=Shewanella sp. (strain W3-18-1) GN=deoC PE=3 SV=1
DEOC_SHEPC - Deoxyribose-phosphate aldolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=deoC PE=3...
gi|124509938, gi... - gi|124546670|ref|ZP_01705737.1| deoxyribose-phosphate aldolase [Shewanella putrefaciens 200], gi|124...
 232.0 [0..1] [256..1]
DEOC_SHEB2 - Deoxyribose-phosphate aldolase OS=Shewanella baltica (strain OS223) GN=deoC PE=3 SV=1
DEOC_SHEB8 - Deoxyribose-phosphate aldolase OS=Shewanella baltica (strain OS185) GN=deoC PE=3 SV=1
DEOC_SHEB9 - Deoxyribose-phosphate aldolase OS=Shewanella baltica (strain OS195) GN=deoC PE=3 SV=1
 229.0 [0..1] [256..1]
gi|90408137, gi|... - gi|90408137|ref|ZP_01216306.1| deoxyribose-phosphate aldolase [Psychromonas sp. CNPT3], gi|90310749|...
 229.0 [0..1] [248..1]
DEOC_SHEB5 - Deoxyribose-phosphate aldolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=deoC PE=3 SV=...
 229.0 [0..1] [256..1]

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Predicted Domain #1
Region A:
Residues: [1-256] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLKKAAQR AIELMDLTTL NDDDTDQKVI DLCHKAVTPA GNTAAICIYP RFIPIARKTL  60
   61 DELGAEDIQI ATVTNFPHGN DDIAIAVLET RAAVAYGADE VDVVFPYRAL MEGNETVGYE 120
  121 LVKACKEACG EVLLKVIIES GVLADPVLIR RASELSIEAG ADFIKTSTGK VPVNATLEAA 180
  181 EIMLTVISEK NTKVGFKPAG GVRDAAQAAE FLGVAERILG ADWVSPRTFR FGASSLLNSL 240
  241 LHTLELADAP KRTQGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.221849
Match: 1jclA
Description: Deoxyribose-phosphate aldolase DeoC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.67031204377352 bayes_pls_golite062009
deoxyribose-phosphate aldolase activity 2.42732299324236 bayes_pls_golite062009
kinase activity 1.94076427145239 bayes_pls_golite062009
fructose-bisphosphate aldolase activity 1.57588823292155 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 1.53236719840557 bayes_pls_golite062009
transaldolase activity 1.20024248197006 bayes_pls_golite062009
transferase activity 0.464721888799972 bayes_pls_golite062009
aldehyde-lyase activity 0.351872954170322 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle