YRC Public Data Repository - Protein Structure Prediction

Protein:	ARGR_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARGR_SHEON.

Description	E-value	Query Range	Subject Range
gi\|37678650, gi\|... - gi\|37678650\|ref\|NP_933259.1\| arginine repressor [Vibrio vulnificus YJ016], gi\|37197390\|dbj\|BAC93230....	201.0	[0..1]	[155..55]
ARGR_VIBCB - Arginine repressor OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=argR PE=3 SV=1 gi\|148869250, gi... - gi\|153834402\|ref\|ZP_01987069.1\| arginine repressor [Vibrio harveyi HY01], gi\|148869250\|gb\|EDL68272.1... ARGR_VIBPA - Arginine repressor OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=argR PE=3 SV=1 ARGR_VIBPA - Arginine repressor OS=Vibrio parahaemolyticus GN=argR PE=3 SV=1	201.0	[0..1]	[155..1]
gi\|116184028, gi... - gi\|75854581\|ref\|ZP_00762267.1\| COG1438: Arginine repressor [Vibrio sp. Ex25], gi\|116184028\|ref\|ZP_01...	199.0	[0..1]	[155..1]
ARGR_VIBVY - Arginine repressor OS=Vibrio vulnificus (strain YJ016) GN=argR PE=1 SV=1 ARGR_VIBVU - Arginine repressor OS=Vibrio vulnificus (strain CMCP6) GN=argR PE=3 SV=1 ARGR_VIBVU - Arginine repressor OS=Vibrio vulnificus GN=argR PE=3 SV=1	198.0	[0..1]	[155..1]
gi\|84394040, gi\|... - gi\|84394040\|ref\|ZP_00992777.1\| arginine repressor [Vibrio splendidus 12B01], gi\|84375326\|gb\|EAP92236... gi\|86147823, gi\|... - gi\|86147823\|ref\|ZP_01066129.1\| arginine repressor [Vibrio sp. MED222], gi\|85834350\|gb\|EAQ52502.1\| ar... ARGR_VIBTL - Arginine repressor OS=Vibrio tasmaniensis (strain LGP32) GN=argR PE=3 SV=1	197.0	[0..1]	[155..1]
gi\|28805307 - gi\|28805307\|dbj\|BAC58587.1\| arginine repressor [Vibrio parahaemolyticus RIMD 2210633] gi\|28805307, gi\|... - gi\|28897098\|ref\|NP_796703.1\| arginine repressor [Vibrio parahaemolyticus RIMD 2210633], gi\|28805307\|...	197.0	[0..1]	[155..18]
gi\|91187612, gi\|... - gi\|91228841\|ref\|ZP_01262747.1\| arginine repressor [Vibrio alginolyticus 12G01], gi\|91187612\|gb\|EAS73...	197.0	[0..1]	[155..1]
gi\|89075546, gi\|... - gi\|89075546\|ref\|ZP_01161951.1\| arginine repressor [Photobacterium sp. SKA34], gi\|89048686\|gb\|EAR5425...	196.0	[0..1]	[156..1]
gi\|75822163, gi\|... - gi\|75822163\|ref\|ZP_00751845.1\| COG1438: Arginine repressor [Vibrio cholerae RC385], gi\|116215468\|ref... gi\|75819637, gi\|... - gi\|75819637\|ref\|ZP_00749708.1\| COG1438: Arginine repressor [Vibrio cholerae V51], gi\|116220236\|ref\|Z... gi\|75814566 - gi\|75814566\|ref\|ZP_00745138.1\| COG1438: Arginine repressor [Vibrio cholerae V52] gi\|75829676, gi\|... - gi\|75829676\|ref\|ZP_00758971.1\| COG1438: Arginine repressor [Vibrio cholerae MO10], gi\|116188470\|ref\|... gi\|75828408 - gi\|75828408\|ref\|ZP_00757843.1\| COG1438: Arginine repressor [Vibrio cholerae O395] ARGR_VIBCH - Arginine repressor OS=Vibrio cholerae GN=argR PE=3 SV=2 ARGR_VIBCH - Arginine repressor OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=argR ...	196.0	[0..1]	[155..1]
gi\|90438080, gi\|... - gi\|90580812\|ref\|ZP_01236615.1\| arginine repressor [Vibrio angustum S14], gi\|90438080\|gb\|EAS63268.1\| ...	196.0	[0..1]	[156..1]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTTKNQDDL VRIFKAILKE ERFGSQSEIV TALQAEGFTN INQSKVSRML SKFGAVRTRN  60
   61 AKQEMVYCLP AELGVPTAGS PLKNLVLDVD HNQAMIVVRT SPGAAQLIAR LLDSIGKPEG 120
  121 ILGTIAGDDT IFICPSSIQD IADTLETIKS LFNYAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1b4aA
Description:	Arginine repressor (ArgR), N-terminal DNA-binding domain; C-terminal domain of arginine repressor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: