YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346275, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	545 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346275, gi|....

Description	E-value	Query Range	Subject Range
gi\|82720444, gi\|... - gi\|82742170\|ref\|ZP_00904871.1\| Gamma-glutamyltranspeptidase [Shewanella sp. W3-18-1], gi\|82720444\|gb... gi\|146294311, gi... - gi\|77816234\|ref\|ZP_00815435.1\| Gamma-glutamyltranspeptidase [Shewanella putrefaciens CN-32], gi\|7780... gi\|124544789, gi... - gi\|124544789\|ref\|ZP_01704037.1\| gamma-glutamyltransferase [Shewanella putrefaciens 200], gi\|12451143...	683.0	[0..1]	[545..26]
gi\|117614283, gi... - gi\|78685184\|ref\|ZP_00849964.1\| Gamma-glutamyltranspeptidase [Shewanella sp. ANA-3], gi\|78507110\|gb\|E...	681.0	[0..1]	[545..26]
gi\|78510649, gi\|... - gi\|78689996\|ref\|ZP_00854650.1\| Gamma-glutamyltranspeptidase [Shewanella sp. MR-7], gi\|78510649\|gb\|EA...	679.0	[0..1]	[545..26]
gi\|113886358, gi... - gi\|82494827\|ref\|ZP_00880406.1\| Gamma-glutamyltranspeptidase [Shewanella sp. MR-4], gi\|82407071\|gb\|EA...	679.0	[0..1]	[545..26]
gi\|160862440, gi... - gi\|160876918\|ref\|YP_001556234.1\| gamma-glutamyltransferase [Shewanella baltica OS195], gi\|160862440\|...	676.0	[0..1]	[545..26]
gi\|68544352, gi\|... - gi\|68544352\|ref\|ZP_00584006.1\| Gamma-glutamyltranspeptidase [Shewanella baltica OS155], gi\|68517948\|...	672.0	[0..1]	[545..26]
gi\|119773807, gi... - gi\|68546607\|ref\|ZP_00586153.1\| Gamma-glutamyltranspeptidase [Shewanella amazonensis SB2B], gi\|685156...	659.0	[0..1]	[545..25]
gi\|196111083, gi... - gi\|88793518\|ref\|ZP_01109232.1\| gamma-glutamyltranspeptidase [Alteromonas macleodii 'Deep ecotype'], ...	649.0	[0..2]	[545..23]
gi\|88784736, gi\|... - gi\|88803857\|ref\|ZP_01119377.1\| gamma-glutamyltranspeptidase [Robiginitalea biformata HTCC2501], gi\|8...	646.0	[0..2]	[545..21]
gi\|66767175, gi\|... - gi\|66767175\|ref\|YP_241937.1\| gamma-glutamyltranspeptidase [Xanthomonas campestris pv. campestris str... gi\|21232751, gi\|... - gi\|21232751\|ref\|NP_638668.1\| gamma-glutamyltranspeptidase [Xanthomonas campestris pv. campestris str...	646.0	[0..2]	[545..23]

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Predicted Domain #1

Region A:
Residues: [1-545]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRITGKAFA TRSEVYATHG MAATSQPLAT QVAIDVLKQG GSAVDAAIAA NAMLGLVEPT  60
   61 GSGVGGDLFA IVWSAKDNKL YGLNASGRSP KSLTLEKLKS LGLDYLPPLG PLPVSVPGAV 120
  121 DGWFELHDKF GKLPMADNLA PAIRYAHEGF PVSELIAYYL EGSGKKLAQF PGFKETYMPN 180
  181 GKMPAVGEIF KNPALANTYE KIAKGGRDAF YKGDIAKSID KYLKAQGGYL SYEDLASHTS 240
  241 EWIEPVSVNY RGYDVWELPP NGQGIAALQI LKTMEPFDVA AMGFNSPEYV HLFVEAKKLA 300
  301 FADRAKFYAD MAFNKVPVKE LISQQYNYER AKLIDLNKAA KSVDAGNPAL QHGDTVYLTT 360
  361 ADKDGNMVSL IQSNYRGMGS GMTPPDLGFV LQDRGQMFDL TEGRVNTYAP GKRPFHTIIP 420
  421 AFVTKDGKPW LSFGVMGGAT QPQMHAQIII NLIDFKMNLQ EAGDAPRILH SGSTEPTGEI 480
  481 MNDGGYVSLE SGFPIETRRE LIKKGHVLRD VLGDFGGYQA IGFNAETGVY RGASESRKDG 540
  541 YAAGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	166.0
Match:	2nlzA
Description:	No description for 2nlzA was found.

Predicted functions:

Term	Confidence	Notes
gamma-glutamyltransferase activity	2.74011689892782	bayes_pls_golite062009
peptidase activity	2.6421095563902	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	2.54551748261349	bayes_pls_golite062009
hydrolase activity	2.49721930187628	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.32542991193149	bayes_pls_golite062009
endopeptidase activity	2.29890628841519	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
binding	0.752066499785082	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: