YRC Public Data Repository - Protein Structure Prediction

Protein:	SYW_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYW_SHEON.

Description	E-value	Query Range	Subject Range
gi\|85060282, gi\|... - gi\|85060282\|ref\|YP_455984.1\| tryptophanyl-tRNA synthase [Sodalis glossinidius str. 'morsitans'], gi\|...	395.0	[0..1]	[331..1]
SYW_HAEIN - Tryptophanyl-tRNA synthetase OS=Haemophilus influenzae GN=trpS PE=3 SV=1 SYW_HAEIN - Tryptophan--tRNA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trp...	394.0	[0..1]	[331..1]
gi\|68057414, gi\|... - gi\|68249215\|ref\|YP_248327.1\| tryptophanyl-tRNA synthetase [Haemophilus influenzae 86-028NP], gi\|6805...	393.0	[0..1]	[331..3]
gi\|229809654, gi... - gi\|229847416\|ref\|ZP_04467516.1\| tryptophanyl-tRNA synthetase [Haemophilus influenzae 7P49H1], gi\|229... gi\|46133005 - gi\|46133005\|ref\|ZP_00156437.2\| COG0180: Tryptophanyl-tRNA synthetase [Haemophilus influenzae R2866] gi\|42628929 - gi\|42628929\|ref\|ZP_00154481.1\| COG0180: Tryptophanyl-tRNA synthetase [Haemophilus influenzae R2846]	393.0	[0..1]	[331..1]
SYW_PASMU - Tryptophanyl-tRNA synthetase OS=Pasteurella multocida GN=trpS PE=3 SV=1 SYW_PASMU - Tryptophan--tRNA ligase OS=Pasteurella multocida (strain Pm70) GN=trpS PE=3 SV=1	393.0	[0..1]	[331..1]
gi\|170718585, gi... - gi\|53728306\|ref\|ZP_00133328.2\| COG0180: Tryptophanyl-tRNA synthetase [Haemophilus somnus 2336], gi\|1...	390.0	[0..1]	[331..1]
gi\|23467807, gi\|... - gi\|23467807\|ref\|ZP_00123385.1\| COG0180: Tryptophanyl-tRNA synthetase [Haemophilus somnus 129PT], gi\|...	390.0	[0..1]	[331..1]
gi\|50123007, gi\|... - gi\|50123007\|ref\|YP_052174.1\| tryptophanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043], gi...	389.0	[0..1]	[331..1]
gi\|15978262, gi\|... - gi\|218927368\|ref\|YP_002345243.1\| tryptophanyl-tRNA synthetase [Yersinia pestis CO92], gi\|16120500\|re... gi\|165915897, gi... - gi\|89105794\|ref\|ZP_01178307.1\| COG0180: Tryptophanyl-tRNA synthetase [Yersinia pestis biovar Orienta... gi\|165919990, gi... - gi\|165928041\|ref\|ZP_02223873.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.... gi\|161511471 - gi\|161511471\|ref\|NP_991560.2\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 910... gi\|229706430, gi... - gi\|229836362\|ref\|ZP_04456529.1\| tryptophan-tRNA ligase [Yersinia pestis Pestoides A], gi\|229706430\|g... gi\|166205661, gi... - gi\|166213363\|ref\|ZP_02239398.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B4... gi\|229696379, gi... - gi\|229840013\|ref\|ZP_04460172.1\| tryptophan-tRNA ligase [Yersinia pestis biovar Orientalis str. PEXU2... gi\|165990587, gi... - gi\|166010497\|ref\|ZP_02231395.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1... gi\|229842094, gi... - gi\|229842094\|ref\|ZP_04462249.1\| tryptophan-tRNA ligase [Yersinia pestis biovar Orientalis str. India... Q664M5\|Q664M5_YERPS - Tryptophanyl-tRNA synthetase - Yersinia pseudotuberculosis gi\|108809303, gi... - gi\|108809303\|ref\|YP_653219.1\| tryptophanyl-tRNA synthetase [Yersinia pestis Antiqua], gi\|108781216\|g... gi\|108814068, gi... - gi\|229904605\|ref\|ZP_04519716.1\| tryptophan-tRNA ligase [Yersinia pestis Nepal516], gi\|229678723\|gb\|E... gi\|167418947, gi... - gi\|167418947\|ref\|ZP_02310700.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.... gi\|167052166, gi... - gi\|167399662\|ref\|ZP_02305186.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG... gi\|167468237 - gi\|167468237\|ref\|ZP_02332941.1\| tryptophanyl-tRNA synthetase [Yersinia pestis FV-1] gi\|162352752, gi... - gi\|77634598\|ref\|ZP_00796695.1\| COG0180: Tryptophanyl-tRNA synthetase [Yersinia pestis Angola], gi\|16... gi\|167425697, gi... - gi\|167425697\|ref\|ZP_02317450.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str... gi\|25292924 - gi\|25292924\|pir\|\|AB0020 tryptophan-tRNA ligase (EC 6.1.1.2) [imported] - Yersinia pestis (strain CO9... gi\|186897233, gi... - gi\|186897233\|ref\|YP_001874345.1\| tryptophanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+], g... gi\|149290247, gi... - gi\|150260839\|ref\|ZP_01917567.1\| tryptophanyl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|1492902... gi\|170022492, gi... - gi\|170022492\|ref\|YP_001718997.1\| tryptophanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII], g... gi\|51591316, gi\|... - gi\|51598034\|ref\|YP_072225.1\| tryptophanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953], gi... gi\|145597407, gi... - gi\|145597407\|ref\|YP_001161482.1\| tryptophanyl-tRNA synthetase [Yersinia pestis Pestoides F], gi\|1452... gi\|21960941, gi\|... - gi\|22127810\|ref\|NP_671233.1\| tryptophanyl-tRNA synthetase [Yersinia pestis KIM], gi\|21960941\|gb\|AAM8...	387.0	[0..2]	[331..14]
SYW_YERPE - Tryptophan--tRNA ligase OS=Yersinia pestis GN=trpS PE=1 SV=2	387.0	[0..2]	[331..10]

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Predicted Domain #1

Region A:
Residues: [1-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPIVLSGA QPSGELTIGN YMGALRQWVA MQDSHDCLYC VVDLHAITVR QDPQALREAC  60
   61 LDTLALYLAC GVDPKKSTVF IQSQVPQHTQ LGWALNCYTQ MGELSRMTQF KDKSQKHANN 120
  121 INVGLFGYPV LMAADILLYQ ANEIPVGQDQ KQHLELTRDI ATRFNNAYGE TFTIPEPFIP 180
  181 EHGAKVMSLQ DPLKKMSKSD DNRNNVIGLL EDPKAVMKKL KKAMTDSDEP PVVRFDIENK 240
  241 PGVSNLLSLM SGITGQSIAS LEAEFEGKMY GHLKGAAGEA VVGMLEPLQE RYRALRADRA 300
  301 YLDQVMRAGA ENAQARAEVT LKKVYEKIGL LV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1i6kA
Description:	Tryptophanyl-tRNA synthetase (TrpRS)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	7.16276509815667	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	7.16276509815667	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.13957775963187	bayes_pls_golite062009
ligase activity	6.11211476973434	bayes_pls_golite062009
tryptophan-tRNA ligase activity	5.34430928486195	bayes_pls_golite062009
glutamate-tRNA ligase activity	2.63681738794687	bayes_pls_golite062009
methionine-tRNA ligase activity	2.56893064485672	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
tyrosine-tRNA ligase activity	1.88984817882585	bayes_pls_golite062009
arginine-tRNA ligase activity	1.50161401062914	bayes_pls_golite062009
cysteine-tRNA ligase activity	0.844943947059557	bayes_pls_golite062009
binding	0.535704308663141	bayes_pls_golite062009
nucleic acid binding	0.449504767632354	bayes_pls_golite062009
nucleotidyltransferase activity	0.2293846471193	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.126511747475258	bayes_pls_golite062009
glutamine-tRNA ligase activity	0.118292082006187	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: