YRC Public Data Repository - Protein Structure Prediction

Protein:	PCKA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	513 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCKA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|115451989, gi... - gi\|215734813\|dbj\|BAG95535.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115451989\|ref...	851.0	[0..6]	[511..141]
gi\|13785471 - gi\|13785471\|dbj\|BAB43909.1\| phosphoenolpyruvate carboxykinase [Flaveria pringlei]	851.0	[0..6]	[511..136]
PCKA_CALS4 - Phosphoenolpyruvate carboxykinase [ATP] OS=Caldanaerobacter subterraneus subsp. tengcongensis (strai... PPCK_THETN, PCKA... - Phosphoenolpyruvate carboxykinase [ATP] OS=Thermoanaerobacter tengcongensis GN=pckA PE=3 SV=1, Phosp...	850.0	[0..4]	[512..11]
gi\|13785469 - gi\|13785469\|dbj\|BAB43908.1\| phosphoenolpyruvate carboxykinase [Flaveria trinervia]	850.0	[0..6]	[511..140]
PCKA2_MOOTA - Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=pckA2 PE=...	845.0	[0..7]	[511..17]
gi\|58036453 - gi\|58036453\|dbj\|BAD88616.1\| phosphoenolpyruvate carboxykinase [Zoysia japonica]	844.0	[0..6]	[511..131]
gi\|226902397, gi... - gi\|237703133\|ref\|ZP_04533614.1\| phosphoenolpyruvate carboxykinase [Escherichia sp. 3_2_53FAA], gi\|22... gi\|91074451, gi\|... - gi\|91212877\|ref\|YP_542863.1\| phosphoenolpyruvate carboxykinase [Escherichia coli UTI89], gi\|91074451...	843.0	[0..3]	[512..41]
gi\|194420419, gi... - gi\|83571676\|ref\|ZP_00923116.1\| COG1866: Phosphoenolpyruvate carboxykinase (ATP) [Shigella dysenteria...	841.0	[0..3]	[512..18]
gi\|26110429, gi\|... - gi\|26250000\|ref\|NP_756040.1\| phosphoenolpyruvate carboxykinase [Escherichia coli CFT073], gi\|2611042...	841.0	[0..3]	[512..41]

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Predicted Domain #1

Region A:
Residues: [1-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGLNRVHY NPSTAQLVEF ALLRGEGELT ANGALVAKTG TRTGRSPGDR FIVKEPGSAA  60
   61 DIEWGPVNQA FEPGAFEGLW ARVEAFLADK ELFVSDLEVG ADPEHYQPVR VTTQYAWHQL 120
  121 FARNLFIIPE EFNRQNKPVW QIINAPDFVC MPERDGTNSD AAVILNFAER KVLLAGLKYA 180
  181 GEMKKSMFSV QNFLLPAQGV LPMHCSANVG KDGDTTLFFG LSGTGKTTLS ADPKRFLIGD 240
  241 DEHGWAPGGV FNIEGGCYAK CIDLSQKNEP VIWDAIRFGT VLENVVMDEH RVPNYKDSSL 300
  301 TENTRAAYPL EHIAQRKEDN RGAEPHAVVF LTCDVSGVLP PVSILSKEQA AYHFLSGYTA 360
  361 KVGSTEIGST SAIQSTFSTC FGAPFFPRPA GVYAELLMKR IESFGSQVYL VNTGWTGGPH 420
  421 GIGKRFDIPT TRAIIDAIVS GELKNVETVH LDTLNLAVPV AVSGVDSNLL NPVNTWSDKA 480
  481 LYAEYAQKLA AAFTKNFAKY QVSDAIRNAG PKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1j3bA
Description:	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-liase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoenolpyruvate carboxykinase activity	5.427657115096	bayes_pls_golite062009
phosphoenolpyruvate carboxykinase (ATP) activity	4.07297753409796	bayes_pls_golite062009
phosphoenolpyruvate carboxykinase (GTP) activity	3.22045404005498	bayes_pls_golite062009
catalytic activity	1.59551963655826	bayes_pls_golite062009
lyase activity	0.903636804009288	bayes_pls_golite062009
carbon-carbon lyase activity	0.63361553348301	bayes_pls_golite062009
carboxy-lyase activity	0.110170641189915	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: