YRC Public Data Repository - Protein Structure Prediction

Protein:	FDHD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FDHD_SHEON.

Description	E-value	Query Range	Subject Range
FDHD_HAEI8 - Sulfurtransferase FdhD OS=Haemophilus influenzae (strain 86-028NP) GN=fdhD PE=3 SV=1	340.0	[0..1]	[268..9]
gi\|145630706 - gi\|145630706\|ref\|ZP_01786485.1\| formate dehydrogenase accessory protein [Haemophilus influenzae 22.4... gi\|145629143, gi... - gi\|145629143\|ref\|ZP_01784942.1\| formate dehydrogenase accessory protein [Haemophilus influenzae 22.1... FDHD_HAEIN - Sulfurtransferase FdhD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=fdhD... gi\|144983832 - gi\|144983832\|gb\|EDJ91282.1\| formate dehydrogenase accessory protein [Haemophilus influenzae R3021] gi\|145639707, gi... - gi\|145639707\|ref\|ZP_01795310.1\| formate dehydrogenase accessory protein [Haemophilus influenzae Pitt... FDHD_HAEIN - Protein fdhD homolog OS=Haemophilus influenzae GN=fdhD PE=3 SV=1 gi\|145636792, gi... - gi\|145636792\|ref\|ZP_01792458.1\| formate dehydrogenase accessory protein [Haemophilus influenzae Pitt...	337.0	[0..1]	[268..9]
gi\|113968453, gi... - gi\|82495835\|ref\|ZP_00881408.1\| Formate dehydrogenase, subunit FdhD [Shewanella sp. MR-4], gi\|8240614...	328.0	[0..1]	[278..1]
gi\|78511497, gi\|... - gi\|78689097\|ref\|ZP_00853762.1\| Formate dehydrogenase, subunit FdhD [Shewanella sp. MR-7], gi\|7851149...	327.0	[0..1]	[278..1]
gi\|75237859 - gi\|75237859\|ref\|ZP_00721874.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a... FDHD_ECOL5 - Sulfurtransferase FdhD OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fdhD PE=3 SV=1	327.0	[0..8]	[268..15]
gi\|75188631 - gi\|75188631\|ref\|ZP_00701898.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a... gi\|75230417 - gi\|75230417\|ref\|ZP_00716903.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a... gi\|75211290 - gi\|75211290\|ref\|ZP_00711389.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a... gi\|75258121 - gi\|75258121\|ref\|ZP_00729582.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a... FDHD_ECO5E - Sulfurtransferase FdhD OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fdhD PE=3 SV=1 gi\|195937536 - gi\|195937536\|ref\|ZP_03082918.1\| formate dehydrogenase accessory protein [Escherichia coli O157:H7 st... FDHD_ECO57 - Sulfurtransferase FdhD OS=Escherichia coli O157:H7 GN=fdhD PE=3 SV=1 gi\|237702928, gi... - gi\|237702928\|ref\|ZP_04533409.1\| fdhD [Escherichia sp. 3_2_53FAA], gi\|226902865\|gb\|EEH89124.1\| fdhD [... FDHD_ECO45 - Sulfurtransferase FdhD OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fdhD PE=3 SV=1 FDHD_ECOSE - Sulfurtransferase FdhD OS=Escherichia coli (strain SE11) GN=fdhD PE=3 SV=1 gi\|254795891, gi... - gi\|254795891\|ref\|YP_003080728.1\| formate dehydrogenase formation protein [Escherichia coli O157:H7 s... FDHD_ECO55 - Sulfurtransferase FdhD OS=Escherichia coli (strain 55989 / EAEC) GN=fdhD PE=3 SV=1 FDHD_ECO81 - Sulfurtransferase FdhD OS=Escherichia coli O81 (strain ED1a) GN=fdhD PE=3 SV=1 FDHD_ECOK1 - Sulfurtransferase FdhD OS=Escherichia coli O1:K1 / APEC GN=fdhD PE=3 SV=1 FDHD_ECOLU - Sulfurtransferase FdhD OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=fdhD PE=3 SV=1 FDHD_ECO7I - Sulfurtransferase FdhD OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=fdhD PE=3 SV=1 gi\|15834075, gi\|... - gi\|15834075\|ref\|NP_312848.1\| formate dehydrogenase accessory protein [Escherichia coli O157:H7 str. ... gi\|12518787, gi\|... - gi\|15804484\|ref\|NP_290524.1\| formate dehydrogenase accessory protein [Escherichia coli O157:H7 EDL93... gi\|209752552, gi... - gi\|25345620\|pir\|\|D86078 affects formate dehydrogenase-N [imported] - Escherichia coli (strain O157:H... FDHD_ECOUT - Sulfurtransferase FdhD OS=Escherichia coli (strain UTI89 / UPEC) GN=fdhD PE=3 SV=1	326.0	[0..8]	[268..15]
gi\|194433232, gi... - gi\|83569840\|ref\|ZP_00921289.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a...	325.0	[0..8]	[268..15]
EG11859 - formate dehydrogenase formation protein / Redox enzyme maturation protein (REMP) for FdnG /FdoG; requ... FDHD_ECODH - Sulfurtransferase FdhD OS=Escherichia coli (strain K12 / DH10B) GN=fdhD PE=3 SV=1 FDHD_ECO8A - Sulfurtransferase FdhD OS=Escherichia coli O8 (strain IAI1) GN=fdhD PE=3 SV=1 FDHD_ECOLI - Protein fdhD - Escherichia coli FDHD_ECOLC - Sulfurtransferase FdhD OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fdhD PE=3 SV=1 gi\|89110133, gi\|... - gi\|89110133\|ref\|AP_003913.1\| formate dehydrogenase formation protein [Escherichia coli str. K-12 sub... FDHD_ECOBW - Sulfurtransferase FdhD OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fdhD PE=3 SV=1 gi\|254039107, gi... - gi\|254039107\|ref\|ZP_04873157.1\| fdhD [Escherichia sp. 1_1_43], gi\|226838543\|gb\|EEH70572.1\| fdhD [Esc... gi\|75176717 - gi\|75176717\|ref\|ZP_00696845.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a... gi\|75197768 - gi\|75197768\|ref\|ZP_00707838.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a... gi\|124501259, gi... - gi\|124527557\|ref\|ZP_01699022.1\| formate dehydrogenase family accessory protein FdhD [Escherichia col... FDHD_SHISS - Sulfurtransferase FdhD OS=Shigella sonnei (strain Ss046) GN=fdhD PE=3 SV=1 FDHD_SHIBS - Sulfurtransferase FdhD OS=Shigella boydii serotype 4 (strain Sb227) GN=fdhD PE=3 SV=1 gi\|75238339, gi\|... - gi\|75238339\|ref\|ZP_00722338.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a... gi\|75513957 - gi\|75513957\|ref\|ZP_00736310.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a... EG11859 - formate dehydrogenase formation protein / Redox enzyme maturation protein (REMP) for FdnG /FdoG; requ...	325.0	[0..8]	[268..15]
gi\|53732568 - gi\|53732568\|ref\|ZP_00154735.2\| COG1526: Uncharacterized protein required for formate dehydrogenase a...	325.0	[0..33]	[268..1]
gi\|24115189, gi\|... - gi\|24115189\|ref\|NP_709699.1\| formate dehydrogenase accessory protein [Shigella flexneri 2a str. 301]... FDHD_SHIF8 - Sulfurtransferase FdhD OS=Shigella flexneri serotype 5b (strain 8401) GN=fdhD PE=3 SV=1 gi\|30064812, gi\|... - gi\|30064812\|ref\|NP_838983.1\| formate dehydrogenase accessory protein [Shigella flexneri 2a str. 2457... FDHD_SHIFL - Sulfurtransferase FdhD OS=Shigella flexneri GN=fdhD PE=3 SV=1	325.0	[0..8]	[268..15]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYHSHTVVT ERKVTLLEQG QASDLTDYVA NEVRVALVYN GISHTVMLAS PENLEEFAIG  60
   61 FTLSERIVSH VNEIKGVDLE FTPEGVLIQV EITQRCFMAL KQLRRNMAGR TGCGLCGVAQ 120
  121 LEEAVKPVIR VDSDARFNID HLQFALEQVK DNQHHFKLTG ATHAAMGLDL EGQIIAAYED 180
  181 IGRHIALDKL IGGCSMRHAK RPVAVLLTSR ASFEMVQKAA SANIQILFAM SAVTSLALEL 240
  241 AEKSNITLIG FCRNGRATLY THGYRLLGLN RASLAKAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.154902
Match:	2pw9A
Description:	No description for 2pw9A was found.

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	11.6538357294979	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.39976727113281	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	5.99996975993203	bayes_pls_golite062009
oxidoreductase activity	3.97029744496041	bayes_pls_golite062009
methyltransferase activity	1.82461172360024	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.74440766585265	bayes_pls_golite062009
catalytic activity	1.70756445127105	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	1.25933001876793	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	1.14540769627856	bayes_pls_golite062009
electron carrier activity	0.851003321957332	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: