YRC Public Data Repository - Protein Structure Prediction

Protein:	SYGB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	688 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYGB_SHEON.

Description	E-value	Query Range	Subject Range
SYGB_HAEIN - Glycyl-tRNA synthetase beta subunit OS=Haemophilus influenzae GN=glyS PE=3 SV=1 SYGB_HAEIN - Glycine--tRNA ligase beta subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / ...	924.0	[0..1]	[688..1]
gi\|46133199 - gi\|46133199\|ref\|ZP_00156789.2\| COG0751: Glycyl-tRNA synthetase, beta subunit [Haemophilus influenzae...	922.0	[0..1]	[688..1]
SYGB_HAEIE - Glycine--tRNA ligase beta subunit OS=Haemophilus influenzae (strain PittEE) GN=glyS PE=3 SV=1 gi\|42630238 - gi\|42630238\|ref\|ZP_00155782.1\| COG0751: Glycyl-tRNA synthetase, beta subunit [Haemophilus influenzae... gi\|229845983, gi... - gi\|229845983\|ref\|ZP_04466095.1\| glycyl-tRNA synthetase subunit beta [Haemophilus influenzae 7P49H1],...	921.0	[0..1]	[688..1]
SYGB_MANSM - Glycine--tRNA ligase beta subunit OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glyS PE=3 SV=...	919.0	[0..1]	[688..1]
SYGB_SHISS - Glycine--tRNA ligase beta subunit OS=Shigella sonnei (strain Ss046) GN=glyS PE=3 SV=1 SYGB_ECO24 - Glycine--tRNA ligase beta subunit OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glyS PE=3 ... SYGB_ECO55 - Glycine--tRNA ligase beta subunit OS=Escherichia coli (strain 55989 / EAEC) GN=glyS PE=3 SV=1	918.0	[0..1]	[688..1]
SYGB_ECOBW - Glycine--tRNA ligase beta subunit OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=glyS PE=3 SV... gi\|242379077, gi... - gi\|251786804\|ref\|YP_003001108.1\| hypothetical protein B21_03361 [Escherichia coli BL21], gi\|24237907... gi\|254290233, gi... - gi\|254290233\|ref\|YP_003055981.1\| glycyl-tRNA synthetase subunit beta [Escherichia coli BL21(DE3)], g... gi\|226839250, gi... - gi\|254038744\|ref\|ZP_04872800.1\| glycyl-tRNA synthetase beta subunit [Escherichia sp. 1_1_43], gi\|226... gi\|254163483, gi... - gi\|254163483\|ref\|YP_003046591.1\| glycyl-tRNA synthetase subunit beta [Escherichia coli B str. REL606... gi\|124526876, gi... - gi\|124526876\|ref\|ZP_01698758.1\| Glycine--tRNA ligase [Escherichia coli B], gi\|124501570\|gb\|EAY49033.... EG10410 - glycine tRNA synthetase, beta subunit / Glycine--tRNA ligase, beta-subunit SYGB_ECODH - Glycine--tRNA ligase beta subunit OS=Escherichia coli (strain K12 / DH10B) GN=glyS PE=3 SV=1 SYGB_ECOLC - Glycine--tRNA ligase beta subunit OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=glyS... gi\|194435847, gi... - gi\|83588588\|ref\|ZP_00927212.1\| COG0751: Glycyl-tRNA synthetase, beta subunit [Escherichia coli 101-1... SYGB_ECOLI - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) (Glycine--tRNA ligase beta chain) (GlyRS) - Escheric... SYGB_ECOHS - Glycine--tRNA ligase beta subunit OS=Escherichia coli O9:H4 (strain HS) GN=glyS PE=3 SV=1 EG10410 - glycine tRNA synthetase, beta subunit / Glycine--tRNA ligase, beta-subunit gi\|85676485, gi\|... - gi\|89110454\|ref\|AP_004234.1\| glycine tRNA synthetase, beta subunit [Escherichia coli str. K-12 subst...	918.0	[0..1]	[688..1]
SYGB_SHIF8 - Glycine--tRNA ligase beta subunit OS=Shigella flexneri serotype 5b (strain 8401) GN=glyS PE=3 SV=1 SYGB_SHIFL - Glycine--tRNA ligase beta subunit OS=Shigella flexneri GN=glyS PE=3 SV=1 SYGB_ECOSE - Glycine--tRNA ligase beta subunit OS=Escherichia coli (strain SE11) GN=glyS PE=3 SV=1 gi\|24114835, gi\|... - gi\|24114835\|ref\|NP_709345.1\| glycyl-tRNA synthetase subunit beta [Shigella flexneri 2a str. 301], gi... gi\|30065154, gi\|... - gi\|30065154\|ref\|NP_839325.1\| glycyl-tRNA synthetase subunit beta [Shigella flexneri 2a str. 2457T], ... gi\|193061668, gi... - gi\|75260153\|ref\|ZP_00731421.1\| COG0751: Glycyl-tRNA synthetase, beta subunit [Escherichia coli E22],... gi\|75231597, gi\|... - gi\|75231597\|ref\|ZP_00717955.1\| COG0751: Glycyl-tRNA synthetase, beta subunit [Escherichia coli B7A],... gi\|194414435, gi... - gi\|75211312\|ref\|ZP_00711411.1\| COG0751: Glycyl-tRNA synthetase, beta subunit [Escherichia coli B171]...	918.0	[0..1]	[688..1]
gi\|75515980, gi\|... - gi\|75515980\|ref\|ZP_00738098.1\| COG0751: Glycyl-tRNA synthetase, beta subunit [Escherichia coli 53638...	918.0	[0..1]	[688..1]
gi\|189359259, gi... - gi\|189359259\|gb\|EDU77678.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. EC44... gi\|188018299, gi... - gi\|188018299\|gb\|EDU56421.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. EC41... gi\|168765973, gi... - gi\|189364795\|gb\|EDU83214.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. EC44... gi\|168759650, gi... - gi\|189369719\|gb\|EDU88135.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. EC45... gi\|189002608, gi... - gi\|189002608\|gb\|EDU71594.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. EC40... gi\|168772480, gi... - gi\|187771698\|gb\|EDU35542.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. EC41... SYGB_ECOK1 - Glycine--tRNA ligase beta subunit OS=Escherichia coli O1:K1 / APEC GN=glyS PE=3 SV=1 SYGB_ECO45 - Glycine--tRNA ligase beta subunit OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=glyS PE=3 SV=1 gi\|217326136, gi... - gi\|217326136\|ref\|ZP_03442220.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. ... SYGB_ECO81 - Glycine--tRNA ligase beta subunit OS=Escherichia coli O81 (strain ED1a) GN=glyS PE=3 SV=1 gi\|168797396, gi... - gi\|189380084\|gb\|EDU98500.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. EC50... gi\|168785430, gi... - gi\|189374282\|gb\|EDU92698.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. EC86... gi\|208808060, gi... - gi\|208808060\|ref\|ZP_03250397.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. ... gi\|195935089 - gi\|195935089\|ref\|ZP_03080471.1\| glycyl-tRNA synthetase subunit beta [Escherichia coli O157:H7 str. E... gi\|208820866, gi... - gi\|208820866\|ref\|ZP_03261186.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. ... gi\|208734062, gi... - gi\|208812785\|ref\|ZP_03254114.1\| glycyl-tRNA synthetase, beta subunit [Escherichia coli O157:H7 str. ... SYGB_ECO27 - Glycine--tRNA ligase beta subunit OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=glyS PE=3 ... SYGB_ECO5E - Glycine--tRNA ligase beta subunit OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glyS PE=3 SV... gi\|75242652, gi\|... - gi\|75242652\|ref\|ZP_00726396.1\| COG0751: Glycyl-tRNA synthetase, beta subunit [Escherichia coli F11],... SYGB_ECOUT - Glycine--tRNA ligase beta subunit OS=Escherichia coli (strain UTI89 / UPEC) GN=glyS PE=3 SV=1 gi\|13363916, gi\|... - gi\|15833696\|ref\|NP_312469.1\| glycyl-tRNA synthetase subunit beta [Escherichia coli O157:H7 str. Saka... sp\|B7ULB9\|SYGB_ECO27 - Glycyl-tRNA synthetase beta subunit OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=glyS PE=... SYGB_ECOL5 - Glycine--tRNA ligase beta subunit OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=glyS PE=3 SV... SYGB_ECO57 - Glycine--tRNA ligase beta subunit OS=Escherichia coli O157:H7 GN=glyS PE=3 SV=2 gi\|209755204, gi... - pir\|\|B91184 glycine tRNA synthetase beta subunit [imported] - Escherichia coli (strain O157:H7, subs... SYGB_ECOL6 - Glycine--tRNA ligase beta subunit OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=... gi\|227883725, gi... - gi\|227883725\|ref\|ZP_04001530.1\| glycyl-tRNA synthetase subunit beta [Escherichia coli 83972], gi\|227... SYGB_ECOL6 - Glycine--tRNA ligase beta subunit OS=Escherichia coli O6 GN=glyS PE=3 SV=2 gi\|226902593, gi... - gi\|237703329\|ref\|ZP_04533810.1\| glycyl-tRNA synthetase subunit beta [Escherichia sp. 3_2_53FAA], gi\|... gi\|254594915, gi... - gi\|254795515\|ref\|YP_003080352.1\| glycine tRNA synthetase, beta subunit [Escherichia coli O157:H7 str...	917.0	[0..1]	[688..1]
SYGB_SHIB3 - Glycine--tRNA ligase beta subunit OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gly...	916.0	[0..1]	[688..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFENLLIEL GTEELPPKAL RKLAESFLAN FTEELTKADL AFKSAVWYAA PRRLALNITE  60
   61 LAIAQADKIV EKRGP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.883	N/A	N/A	d.58.18	Regulatory domain in the aminoacid metabolism

Predicted Domain #2

Region A:
Residues: [76-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVSSAFDAGG KPTKAAEGWA RGNGITVDQA ERLVTDKGEW LVYNAKVEGV ETKSLVAAMA  60
   61 QRALDKLPIP KPMRWGSSKT QFIRPVHTAT MLLGSELIEG ELLGIKSARN IRGHRFMGTG 120
  121 FELDHADNYL TLLKEKGKVI ADYESRKALI KADAEKAAAK IGGTADIEDA LLEEVTSLVE 180
  181 WPVVLTASFE EKFLSV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [272-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSEALVYTMK GDQKYFPVFD DAGKLLPNFI FVANIESKDP AQIISGNEKV VRPRLADAEF  60
   61 FFNTDKKH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [340-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLESRLPSLE TVLFQQQLGT LKDKVTRISA LAAFIAEQTG ANAVDAARAG LLSKTDLMTN  60
   61 MVMEFTDTQG TMGMHYARLD GETEAVALAM EEQYKPKFSG DTVP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.945	a.74.1	Cyclin-like

Predicted Domain #5

Region A:
Residues: [444-688]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAAVSCAVAL ADKLDTLVGI FGIGQAPKGA ADPFALRRAA IGVLRIIVEN KLPLDLVTLI  60
   61 AKAQELHGAN LSNANASEEV LEFLMARFRA WYQDKGINVD VILAVLARRP TRPADFDSRI 120
  121 NAVSHFRGLE ASSALAAANK RVSNILAKVE GELPSSVNVA LLSEAAEQAL AAKLAELQPQ 180
  181 LAPLFANADY QQALTLLASL RESVDQFFED VMVMADDAAL RNNRLALLNN LREQFLHVAD 240
  241 ISLLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.221849
Match:	1bs2A
Description:	Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits