| Protein: | SYGB_SHEON |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 688 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYGB_SHEON.
| Description | E-value | Query Range |
Subject Range |
|
|
924.0 | [0..1] | [688..1] |
|
|
922.0 | [0..1] | [688..1] |
|
|
921.0 | [0..1] | [688..1] |
|
|
919.0 | [0..1] | [688..1] |
|
|
918.0 | [0..1] | [688..1] |
|
|
918.0 | [0..1] | [688..1] |
|
|
918.0 | [0..1] | [688..1] |
|
|
918.0 | [0..1] | [688..1] |
|
|
917.0 | [0..1] | [688..1] |
|
|
916.0 | [0..1] | [688..1] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MNFENLLIEL GTEELPPKAL RKLAESFLAN FTEELTKADL AFKSAVWYAA PRRLALNITE 60
61 LAIAQADKIV EKRGP
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.883 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.855 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.839 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.833 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.805 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.746 | N/A | N/A | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.741 | N/A | N/A | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.632 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.606 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.598 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.598 | N/A | N/A | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.504 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.489 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.463 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.460 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
|
Region A: Residues: [76-271] |
1 11 21 31 41 51
| | | | | |
1 AVSSAFDAGG KPTKAAEGWA RGNGITVDQA ERLVTDKGEW LVYNAKVEGV ETKSLVAAMA 60
61 QRALDKLPIP KPMRWGSSKT QFIRPVHTAT MLLGSELIEG ELLGIKSARN IRGHRFMGTG 120
121 FELDHADNYL TLLKEKGKVI ADYESRKALI KADAEKAAAK IGGTADIEDA LLEEVTSLVE 180
181 WPVVLTASFE EKFLSV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [272-339] |
1 11 21 31 41 51
| | | | | |
1 PSEALVYTMK GDQKYFPVFD DAGKLLPNFI FVANIESKDP AQIISGNEKV VRPRLADAEF 60
61 FFNTDKKH
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.781 | N/A | N/A | d.50.5 | Description not found. |
| View | Download | 0.653 | N/A | N/A | d.354.1 | Description not found. |
| View | Download | 0.523 | N/A | N/A | d.348.1 | Description not found. |
| View | Download | 0.521 | N/A | N/A | d.52.9 | Description not found. |
| View | Download | 0.473 | N/A | N/A | d.348.1 | Description not found. |
| View | Download | 0.467 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.450 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.422 | N/A | N/A | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.404 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.399 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.309 | N/A | N/A | d.253.1 | Description not found. |
| View | Download | 0.236 | N/A | N/A | d.253.1 | Description not found. |
| View | Download | 0.217 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
|
Region A: Residues: [340-443] |
1 11 21 31 41 51
| | | | | |
1 TLESRLPSLE TVLFQQQLGT LKDKVTRISA LAAFIAEQTG ANAVDAARAG LLSKTDLMTN 60
61 MVMEFTDTQG TMGMHYARLD GETEAVALAM EEQYKPKFSG DTVP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.945 | a.74.1 | Cyclin-like |
| View | Download | 0.935 | a.74.1 | Cyclin-like |
| View | Download | 0.852 | a.64.1 | Saposin |
| View | Download | 0.777 | a.118.8 | TPR-like |
| View | Download | 0.764 | a.64.1 | Saposin |
| View | Download | 0.764 | a.74.1 | Cyclin-like |
| View | Download | 0.733 | a.118.1 | ARM repeat |
| View | Download | 0.728 | a.74.1 | Cyclin-like |
| View | Download | 0.705 | a.64.1 | Saposin |
| View | Download | 0.632 | a.118.1 | ARM repeat |
|
Region A: Residues: [444-688] |
1 11 21 31 41 51
| | | | | |
1 TAAVSCAVAL ADKLDTLVGI FGIGQAPKGA ADPFALRRAA IGVLRIIVEN KLPLDLVTLI 60
61 AKAQELHGAN LSNANASEEV LEFLMARFRA WYQDKGINVD VILAVLARRP TRPADFDSRI 120
121 NAVSHFRGLE ASSALAAANK RVSNILAKVE GELPSSVNVA LLSEAAEQAL AAKLAELQPQ 180
181 LAPLFANADY QQALTLLASL RESVDQFFED VMVMADDAAL RNNRLALLNN LREQFLHVAD 240
241 ISLLQ
|
| Detection Method: | |
| Confidence: | 40.221849 |
| Match: | 1bs2A |
| Description: | Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |
Matching Structure (courtesy of the PDB): |
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