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View Structure Prediction Details

Protein: gi|24054654, gi|...
Organism: Shigella flexneri 2a str. 301
Length: 199 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24054654, gi|....

Description E-value Query
Range
Subject
Range
gi|117626340, gi... - gi|117626340|ref|YP_859663.1| single strand DNA-binding protein [Escherichia coli APEC O1], gi|11551...
245.0 [0..3] [199..1]
gi|147870 - gi|147870|gb|AAA24649.1| single-strand DNA-binding protein (ssb) [Escherichia coli]
228.0 [0..22] [199..1]
gi|81243673, gi|... - gi|82779525|ref|YP_405874.1| single-strand DNA-binding protein [Shigella dysenteriae Sd197], gi|8124...
222.0 [0..22] [199..1]
gi|218697768, gi... - gi|218697768|ref|YP_002405435.1| single-stranded DNA-binding protein [Escherichia coli 55989], gi|21...
gi|218372710, gi... - gi|218702724|ref|YP_002410353.1| single-stranded DNA-binding protein [Escherichia coli IAI39], gi|21...
gi|218434778, gi... - gi|218707681|ref|YP_002415200.1| single-stranded DNA-binding protein [Escherichia coli UMN026], gi|2...
gi|15834295, gi|... - gi|15834295|ref|NP_313068.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. Saka...
gi|110644406, gi... - gi|110644406|ref|YP_672136.1| single-stranded DNA-binding protein [Escherichia coli 536], gi|1103459...
gi|110617472, gi... - gi|110807924|ref|YP_691444.1| single-strand DNA-binding protein [Shigella flexneri 5 str. 8401], gi|...
SSB_SHIFL - Single-stranded DNA-binding protein OS=Shigella flexneri GN=ssb PE=3 SV=2
gi|168748095, gi... - gi|188017416|gb|EDU55538.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC411...
SSB_ECOLI - Single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) - Escherichia coli
gi|168755227, gi... - gi|189357468|gb|EDU75887.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC440...
SSB_ECOL6 - Single-stranded DNA-binding protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) G...
gi|168760906, gi... - gi|189368538|gb|EDU86954.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC450...
gi|30042907, gi|... - gi|30064648|ref|NP_838819.1| single-strand DNA-binding protein [Shigella flexneri 2a str. 2457T], gi...
gi|189364141, gi... - gi|189364141|gb|EDU82560.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC448...
SSB_ECO57 - Single-stranded DNA-binding protein OS=Escherichia coli O157:H7 GN=ssb PE=3 SV=2
gi|168774415, gi... - gi|187769924|gb|EDU33768.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC419...
EG10976 - single-stranded DNA-binding protein / Single-stranded DNA-binding protein; alkali-inducible; homotet...
gi|168780470, gi... - gi|189001691|gb|EDU70677.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC407...
gi|189374931, gi... - gi|189374931|gb|EDU93347.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC869...
gi|189379074, gi... - gi|189379074|gb|EDU97490.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC508...
gi|82546402, gi|... - gi|82546402|ref|YP_410349.1| single-strand DNA-binding protein [Shigella boydii Sb227], gi|81247813|...
gi|85676811, gi|... - gi|89110780|ref|AP_004560.1| Single-stranded DNA-binding protein [Escherichia coli str. K-12 substr....
gi|73858030, gi|... - gi|74314553|ref|YP_312972.1| single-strand DNA-binding protein [Shigella sonnei Ss046], gi|73858030|...
SSB_ECOL6 - Single-stranded DNA-binding protein OS=Escherichia coli O6 GN=ssb PE=3 SV=2
gi|56384074, gi|... - gi|56480523|ref|NP_709860.2| single-strand DNA-binding protein [Shigella flexneri 2a str. 301], gi|5...
gi|162138311 - gi|162138311|ref|YP_543584.2| single-strand DNA-binding protein [Escherichia coli UTI89]
gi|162317560 - gi|162317560|ref|YP_859663.2| single-strand DNA-binding protein [Escherichia coli APEC O1]
gi|75211987, gi|... - gi|75211987|ref|ZP_00712042.1| COG0629: Single-stranded DNA-binding protein [Escherichia coli B171],...
gi|209397137, gi... - gi|209397137|ref|YP_002273599.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. ...
gi|190901176, gi... - gi|75227985|ref|ZP_00714676.1| COG0629: Single-stranded DNA-binding protein [Escherichia coli B7A], ...
gi|209921544, gi... - gi|209921544|ref|YP_002295628.1| single-stranded DNA-binding protein [Escherichia coli SE11], gi|209...
gi|157158944, gi... - gi|75188783|ref|ZP_00702050.1| COG0629: Single-stranded DNA-binding protein [Escherichia coli E24377...
gi|215489405, gi... - gi|215489405|ref|YP_002331836.1| single-stranded DNA-binding protein [Escherichia coli O127:H6 str. ...
gi|227836060, gi... - gi|227886919|ref|ZP_04004724.1| single-stranded DNA-binding protein [Escherichia coli 83972], gi|227...
gi|157163528, gi... - gi|75197918|ref|ZP_00707988.1| COG0629: Single-stranded DNA-binding protein [Escherichia coli HS], g...
gi|217320876, gi... - gi|217324655|ref|ZP_03440739.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. T...
gi|238903169, gi... - gi|238903169|ref|YP_002928965.1| single-stranded DNA-binding protein [Escherichia coli BW2952], gi|2...
gi|75258977, gi|... - gi|75258977|ref|ZP_00730345.1| COG0629: Single-stranded DNA-binding protein [Escherichia coli E22], ...
gi|218358922, gi... - gi|218551380|ref|YP_002385172.1| single-stranded DNA-binding protein [Escherichia fergusonii ATCC 35...
gi|242379587, gi... - gi|251787314|ref|YP_003001618.1| hypothetical protein B21_03891 [Escherichia coli BL21], gi|24237958...
gi|75514818, gi|... - gi|75514818|ref|ZP_00737047.1| COG0629: Single-stranded DNA-binding protein [Escherichia coli 53638]...
gi|218363386, gi... - gi|218556617|ref|YP_002389531.1| single-stranded DNA-binding protein [Escherichia coli IAI1], gi|218...
gi|253980052, gi... - gi|254290745|ref|YP_003056493.1| single-strand DNA-binding protein [Escherichia coli BL21(DE3)], gi|...
gi|192958856, gi... - gi|75238595|ref|ZP_00722584.1| COG0629: Single-stranded DNA-binding protein [Escherichia coli E11001...
gi|218561142, gi... - gi|218561142|ref|YP_002394055.1| single-stranded DNA-binding protein [Escherichia coli S88], gi|2183...
gi|253975896, gi... - gi|254163995|ref|YP_003047103.1| single-strand DNA-binding protein [Escherichia coli B str. REL606],...
gi|75241099, gi|... - gi|75241099|ref|ZP_00724973.1| COG0629: Single-stranded DNA-binding protein [Escherichia coli F11], ...
gi|218692349, gi... - gi|218692349|ref|YP_002400561.1| single-stranded DNA-binding protein [Escherichia coli ED1a], gi|218...
gi|254796079, gi... - gi|254796079|ref|YP_003080916.1| Single-stranded DNA-binding protein [Escherichia coli O157:H7 str. ...
gi|170021942, gi... - gi|170021942|ref|YP_001726896.1| single-stranded DNA-binding protein [Escherichia coli ATCC 8739], g...
gi|169891350, gi... - gi|170083515|ref|YP_001732835.1| single-stranded DNA-binding protein [Escherichia coli str. K-12 sub...
gi|170520013, gi... - gi|170682295|ref|YP_001746449.1| single-stranded DNA-binding protein [Escherichia coli SMS-3-5], gi|...
gi|194432319, gi... - gi|194432319|ref|ZP_03064607.1| single-stranded DNA-binding protein [Shigella dysenteriae 1012], gi|...
gi|195935843 - gi|195935843|ref|ZP_03081225.1| single-strand DNA-binding protein [Escherichia coli O157:H7 str. EC4...
gi|83587182, gi|... - gi|83587182|ref|ZP_00925811.1| COG0629: Single-stranded DNA-binding protein [Escherichia coli 101-1]...
gi|208726257, gi... - gi|208806456|ref|ZP_03248793.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. E...
gi|208735285, gi... - gi|208814008|ref|ZP_03255337.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. E...
gi|208738557, gi... - gi|208818434|ref|ZP_03258754.1| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. E...
EG10976 - single-stranded DNA-binding protein / Single-stranded DNA-binding protein; alkali-inducible; homotet...
gi|124527698, gi... - gi|124527698|ref|ZP_01699133.1| single-strand binding protein [Escherichia coli B], gi|124501141|gb|...
222.0 [0..22] [199..1]
gi|12519013, gi|... - gi|15804651|ref|NP_290692.1| single-strand DNA-binding protein [Escherichia coli O157:H7 EDL933], gi...
gi|25294292 - gi|25294292|pir||E86099 ssDNA-binding protein [imported] - Escherichia coli (strain O157:H7, substra...
222.0 [0..22] [199..1]
gi|75179580, gi|... - gi|75179580|ref|ZP_00699584.1| COG0629: Single-stranded DNA-binding protein [Shigella boydii BS512],...
217.0 [0..22] [199..1]
gi|84780626, gi|... - gi|85060106|ref|YP_455808.1| single-strand DNA-binding protein [Sodalis glossinidius str. 'morsitans...
216.0 [0..22] [199..1]
SSB_SERMA - Single-stranded DNA-binding protein OS=Serratia marcescens GN=ssb PE=1 SV=2
213.0 [0..22] [199..1]
gi|37528177, gi|... - gi|37528177|ref|NP_931522.1| single-strand DNA-binding protein [Photorhabdus luminescens subsp. laum...
212.0 [0..22] [199..1]
gi|3851548 - gi|3851548|gb|AAC72352.1| single strand DNA-binding protein; SSB [Vibrio cholerae]
208.0 [0..18] [199..12]

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Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMVQSRVYT YSERFFSGDT NMASRGVNKV ILVGNLGQDP EVRYMPNGGA VANITLATSE  60
   61 SWRDKATGEM KEQTEWHRVV LFGKLAEVAS EYLRKGSQVY IEGQLRTRKW TDQSGQDRYT 120
  121 TEVVVNVGGT MQMLGGRQGG GAPAGGNIGG GQPQGGWGQP QQPQGGNQFS GGAQSRPQQS 180
  181 APAAPSNEPP MDFDDDIPF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.39794
Match: 1eqqA
Description: SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleic acid binding 1.65948797337693 bayes_pls_golite062009
single-stranded DNA binding 1.38758756313423 bayes_pls_golite062009
structure-specific DNA binding 1.30327082958682 bayes_pls_golite062009
binding 0.902189695502298 bayes_pls_golite062009
DNA binding 0.9001707539121 bayes_pls_golite062009
structural constituent of ribosome 0.0989196136046104 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle