| Protein: | VPS45_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 577 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS45_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..577] | [1..577] |
|
|
0.0 | [7..575] | [2..582] |
|
|
0.0 | [7..575] | [2..582] |
|
|
0.0 | [7..575] | [2..582] |
|
|
0.0 | [7..575] | [2..583] |
|
|
0.0 | [3..574] | [82..665] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MNLFDVADFY INKIVTSQSK LSVANVNEHQ RIKVLLLDKN TTPTISLCAT QSELLKHEIY 60
61 LVERIENEQR EVSRHLRCLV YVKPTEETLQ HLLRELRNPR YGEYQIFFSN IVSKSQLERL 120
121 AESDDLEAVT KVEEIF
|
| Detection Method: |  |
| Confidence: | 423.0103 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNARE binding | 4.56428593085019 | bayes_pls_golite062009 |
| syntaxin binding | 3.46044132736061 | bayes_pls_golite062009 |
| binding | 2.7837022903231 | bayes_pls_golite062009 |
| protein binding | 2.77285532000616 | bayes_pls_golite062009 |
| syntaxin-1 binding | 0.269372794919901 | bayes_pls_golite062009 |
|
Region A: Residues: [137-244] |
1 11 21 31 41 51
| | | | | |
1 QDFFILNQDL FSFDLQPREF LSNKLVWSEG GLTKCTNSLV SVLLSLKIKP DIRYEGASKI 60
61 CERLAKEVSY EIGKNERTFF DFPVMDSTPV LLILDRNTDP ITPLLQPW
|
|
Region B: Residues: [484-577] |
1 11 21 31 41 51
| | | | | |
1 IPEISSLLTD LSKNALFRDR FKEIDTQGHR VIGNQQSKDI PQDVILFVIG GVTYEEARLV 60
61 HDFNGTMNNR MRVVLGGTSI LSTKEYMDSI RSAK
|
| Detection Method: | |
| Confidence: | 423.0103 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [245-356] |
1 11 21 31 41 51
| | | | | |
1 TYQSMINEYI GIKRNIVDLS KVPRIDKDLE KVTLSSKQDA FFRDTMYLNF GELGDKVKQY 60
61 VTTYKDKTQT NSQINSIEDI KNFIEKYPEF RKLSGNVAKH MAIVGELDRQ LK
|
| Detection Method: | |
| Confidence: | 423.0103 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [357-483] |
1 11 21 31 41 51
| | | | | |
1 IKNIWEISEI EQNLSAHDAN EEDFSDLIKL LQNEAVDKYY KLKLACIYSL NNQTSSDKIR 60
61 QLVEILSQQL PPEDVNFFHK FKSLFSRQDK MTQSNHDKDD ILTELARRFN SRMNSKSNTA 120
121 ENVYMQH
|
| Detection Method: | |
| Confidence: | 423.0103 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
| Matching Structure (courtesy of the PDB): |
|
