| Protein: | VPS33_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 691 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS33_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..691] | [1..691] |
|
|
0.0 | [31..691] | [2..644] |
|
|
0.0 | [52..578] | [22..537] |
|
|
0.0 | [39..578] | [12..537] |
|
|
0.0 | [52..578] | [22..537] |
|
|
0.0 | [42..577] | [7..541] |
|
Region A: Residues: [1-240] |
1 11 21 31 41 51
| | | | | |
1 MNRFWNTKKF SLTNADGLCA TLNEISQNDE VLVVQPSVLP VLNSLLTFQD LTQSTPVRKI 60
61 TLLDDQLSDD LPSALGSVPQ MDLIFLIDVR TSLRLPPQLL DAAQKHNLSS LHIIYCRWKP 120
121 SFQNTLEDTE QWQKDGFDLN SKKTHFPNVI ESQLKELSNE YTLYPWDLLP FPQIDENVLL 180
181 THSLYNMENV NMYYPNLRSL QSATESILVD DMVNSLQSLI FETNSIITNV VSIGNLSKRC 240
241
|
| Detection Method: |  |
| Confidence: | 166.9897 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNARE binding | 3.42828022195984 | bayes_pls_golite062009 |
| binding | 2.63582271791607 | bayes_pls_golite062009 |
| syntaxin binding | 2.11416428645287 | bayes_pls_golite062009 |
| protein binding | 1.92978960054246 | bayes_pls_golite062009 |
|
Region A: Residues: [241-396] |
1 11 21 31 41 51
| | | | | |
1 SHLLKKRIDE HQTENDLFIK GTLYGERTNC GLEMDLIILE RNTDPITPLL TQLTYAGILD 60
61 DLYEFNSGIK IKEKDMNFNY KEDKIWNDLK FLNFGSIGPQ LNKLAKELQT QYDTRHKAES 120
121 VHEIKEFVDS LGSLQQRQAF LKNHTTLSSD VLKVVE
|
| Detection Method: | |
| Confidence: | 166.9897 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [397-609] |
1 11 21 31 41 51
| | | | | |
1 TEEYGSFNKI LELELEILMG NTLNNDIEDI ILELQYQYEV DQKKILRLIC LLSLCKNSLR 60
61 EKDYEYLRTF MIDSWGIEKC FQLESLAELG FFTSKTGKTD LHITTSKSTR LQKEYRYISQ 120
121 WFNTVPIEDE HAADKITNEN DDFSEATFAY SGVVPLTMRL VQMLYDRSIL FHNYSSQQPF 180
181 ILSREPRVSQ TEDLIEQLYG DSHAIEESIW VPG
|
| Detection Method: | |
| Confidence: | 166.9897 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [610-691] |
1 11 21 31 41 51
| | | | | |
1 TITKKINASI KSNNRRSIDG SNGTFHAAED IALVVFLGGV TMGEIAIMKH LQKILGKKGI 60
61 NKRFIIIADG LINGTRIMNS IS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.719 | 0.261 | fungal-type vacuole membrane | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.739 | 0.052 | fungal-type vacuole membrane | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.832 | 0.023 | fungal-type vacuole membrane | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.726 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.703 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.617 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.594 | N/A | N/A | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.583 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.531 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.525 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.518 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.479 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.470 | N/A | N/A | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.468 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.457 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.455 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.454 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.450 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.449 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.448 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.438 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.434 | N/A | N/A | d.68.4 | YhbY-like |
| View | Download | 0.431 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.431 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.428 | N/A | N/A | g.7.1 | Snake toxin-like |
| View | Download | 0.426 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.413 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.413 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.412 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.409 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.406 | N/A | N/A | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.398 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.396 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.395 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.393 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.392 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.383 | N/A | N/A | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.379 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.375 | N/A | N/A | d.58.49 | YajQ-like |
| View | Download | 0.374 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.368 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.367 | N/A | N/A | d.79.3 | L30e-like |
| View | Download | 0.367 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.362 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.360 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.358 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.355 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.354 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.354 | N/A | N/A | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.353 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.348 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.348 | N/A | N/A | d.79.3 | L30e-like |
| View | Download | 0.347 | N/A | N/A | d.68.4 | YhbY-like |
| View | Download | 0.346 | N/A | N/A | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.343 | N/A | N/A | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.343 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.342 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.339 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.338 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.338 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.337 | N/A | N/A | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.336 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.336 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.335 | N/A | N/A | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.335 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.334 | N/A | N/A | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.333 | N/A | N/A | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.331 | N/A | N/A | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.331 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.330 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.328 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.325 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.324 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.324 | N/A | N/A | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.320 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.318 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.317 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.316 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.314 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.311 | N/A | N/A | d.79.3 | L30e-like |
| View | Download | 0.310 | N/A | N/A | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.307 | N/A | N/A | d.118.1 | N-acetylmuramoyl-L-alanine amidase-like |
| View | Download | 0.293 | N/A | N/A | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.292 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.288 | N/A | N/A | d.68.4 | YhbY-like |
| View | Download | 0.284 | N/A | N/A | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.283 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.280 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.277 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.273 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.270 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.269 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.267 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.265 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.264 | N/A | N/A | c.23.5 | Flavoproteins |
| View | Download | 0.264 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.264 | N/A | N/A | c.23.1 | CheY-like |
| View | Download | 0.262 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.262 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.262 | N/A | N/A | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.260 | N/A | N/A | d.79.1 | YjgF-like |
| View | Download | 0.257 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.256 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.255 | N/A | N/A | c.32.1 | Tubulin/Dihydroxyacetone kinase nucleotide-binding domain |
| View | Download | 0.253 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.253 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.252 | N/A | N/A | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.252 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.250 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.250 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.247 | N/A | N/A | d.79.1 | YjgF-like |
| View | Download | 0.245 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.244 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.243 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.243 | N/A | N/A | c.95.1 | Thiolase-like |
| View | Download | 0.241 | N/A | N/A | c.46.1 | Rhodanese/Cell cycle control phosphatase |
| View | Download | 0.241 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.240 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.240 | N/A | N/A | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
| View | Download | 0.239 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.238 | N/A | N/A | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.238 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.238 | N/A | N/A | d.203.1 | DsrC, the gamma subunit of dissimilatory sulfite reductase |
| View | Download | 0.238 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.238 | N/A | N/A | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
| View | Download | 0.235 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.234 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.234 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.233 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.231 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.230 | N/A | N/A | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.229 | N/A | N/A | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.228 | N/A | N/A | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.228 | N/A | N/A | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.225 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.223 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.221 | N/A | N/A | c.23.1 | CheY-like |
| View | Download | 0.221 | N/A | N/A | c.95.1 | Thiolase-like |
| View | Download | 0.221 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.220 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.218 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.218 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.217 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.216 | N/A | N/A | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.214 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.214 | N/A | N/A | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.213 | N/A | N/A | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
| View | Download | 0.210 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.210 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.209 | N/A | N/A | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.209 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.205 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.205 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.205 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.204 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.204 | N/A | N/A | d.79.3 | L30e-like |
| View | Download | 0.203 | N/A | N/A | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.201 | N/A | N/A | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
