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View Structure Prediction Details

Protein: TR120_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 1289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TR120_YEAST.

Description E-value Query
Range
Subject
Range
TR120_YEAST - Trafficking protein particle complex II-specific subunit 120 OS=Saccharomyces cerevisiae (strain ATC...
TRS120 - One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates...
0.0 [1..1289] [1..1289]
SPAC6G10.05c - TRAPP complex subunit Trs120
TR120_SCHPO - Transport protein particle subunit trs120 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...
0.0 [7..1136] [5..1059]
gi|9309269 - gi|9309269|gb|AAF87048.1| hypercellular protein [Aspergillus nidulans]
0.0 [56..1136] [1..1212]
CE03069 - WBGene00007956 status:Partially_confirmed TR:Q93330 protein_id:CAB01686.1
0.0 [171..1010] [116..979]
gi|15620823 - gi|15620823|dbj|BAB67775.1| KIAA1882 protein [Homo sapiens]
0.0 [231..950] [185..820]
TR120_ARATH - Trafficking protein particle complex II-specific subunit 120 homolog OS=Arabidopsis thaliana GN=TRS1...
2.0E-90 [404..883] [273..727]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILKHFPSY VGPSKIRTLV IPIGHWTRKE FNNAVQKLSE FNEIHLSDVT PIDSPIFTPQ  60
   61 GFPHGKLFFD FLTIDHDDAL ELFLYDFEPF RKTFVIIGLV NDYSDPLTNL NFMKEKYPTL 120
  121 ISPNLVYASS TPTKELEQTI DTMENVFASS PDMQKNIETI MCDIARNFLT ALNSYYSSYK 180
  181 HVTLRSPGAI GGNAVLKTTL IRQN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [205-992]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYTSSSSSTP MSAVQSSVSS SSKAGSVTTA SKRLSSFEMT TNSLKRSASL KLATTLSTSE  60
   61 NRSQQKSLGR QMKILGNFQL LAGRYVDALN SFVDAITTLY KVRDYLWLGS ALDGISICFL 120
  121 LLSYLGLSYQ IPQIVSLICP VEKLNFESSS TGISPVDSNS KATASTTASS TPRNSISIAA 180
  181 MQSPRNSIMS LSAPALNIDV ENINLPLLIK CISDKVLYYY DLSLMHNSEY APQVVYCEFL 240
  241 LKTLTFMTSC YKSSEFSKDV LDNIVKNQHR ALSDIPNSPM FPRFEVYFYS NKLFELQLKE 300
  301 MQVEAQIKIY STMAEVYRLL GYKRKQLFVL RLLMVALLAT PNKIAWHPDY RTLIDTIIEL 360
  361 LNINESEAKI NVDDPSQSTW LILQKKILQL CIKVSRKIND FEYVAKFSSI LITKYTHLLN 420
  421 QSEQDALFKE YIQPSITNES ITSYWDPFIL REVVINRILD SDPTSNEIPL ESDVSSLESL 480
  481 ENRQKTQDIN PQEVFNPFKR VQPTSFVSNN STKVPILVFL VGDKAEFTCR VQNPFKFDFT 540
  541 INDIQLDEEI SEFCEIDRKA VSYSGPYNVK AESIRSITLP LIIKKPTYKK IYEISCLKIS 600
  601 ILKLPLQKFD IINDSRRSNP VEEEAEYSKC IYGKLKIKIL PEQPQLELLS TSKMTRNSWM 660
  661 MLDGTKTDFH ITVRNKSLSC AINHIKIIPM NNIEQMLKPD YWKKMPPDDL YIMEKQLDWL 720
  721 SKSCVRIIKL PTVIKPNETI TFDLELDNTA VPFNFTGFDL LIEYGMSATD ESCIYLKKLS 780
  781 IPYEVTLR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [993-1289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTIEVPSMDI IPLNELFSSQ VENVDWIEYV MSKIRAESNL HSRDFILLLL DFRNSWIDGI  60
   61 KLNVQFEDFT SNEYHVEASH TSRIIVPIKK IDYKKYNFEN TPIPRIYPGR QFIQSGLNEE 120
  121 QTIEMRQKFW CREHIISKLK CNWKLTTDQS VTGSVDFNKF IEKFDHKMVY TIYPGRLFYG 180
  181 VQLLLDEPKV KVGEIINLKI ITEPTSTCRR KQNSTVNFLD IVIFDSKTSK ILPRSNRRIL 240
  241 YNGSLTKPIS TTKVSEINLE IIPIEKGRYE FSVCISKSNN QDGIIQFDSE NVILSVI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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