| Protein: | PAP2_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 584 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAP2_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..584] | [1..584] |
|
|
0.0 | [4..549] | [24..558] |
|
|
3.0E-99 | [20..490] | [674..1125] |
|
|
4.0E-95 | [144..537] | [2..433] |
|
|
1.0E-94 | [144..537] | [2..433] |
|
|
1.0E-94 | [144..537] | [3..434] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MGAKSVTASS SKKIKNRHNG KVKKSKKIKK VRKPQKSISL NDENEVEILP SRNEQETNKL 60
61 PKDHVTADGI LVLEHKSDDD EGFDVYDGHF DNPTDIPSTT EESKTPSLAV HGDEKD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [117-192] |
1 11 21 31 41 51
| | | | | |
1 LANNDDFISL SASSEDEQAE QEEEREKQEL EIKKEKQKEI LNTDYPWILN HDHSKQKEIS 60
61 DWLTFEIKDF VAYISP
|
|
Region B: Residues: [304-584] |
1 11 21 31 41 51
| | | | | |
1 AAKLIREWLD DTPGLRELVL IVKQFLHARR LNNVHTGGLG GFSIICLVFS FLHMHPRIIT 60
61 NEIDPKDNLG VLLIEFFELY GKNFGYDDVA LGSSDGYPVY FPKSTWSAIQ PIKNPFSLAI 120
121 QDPGDESNNI SRGSFNIRDI KKAFAGAFDL LTNRCFELHS ATFKDRLGKS ILGNVIKYRG 180
181 KARDFKDERG LVLNKAIIEN ENYHKKRSRI IHDEDFAEDT VTSTATATTT DDDYEITNPP 240
241 AKKAKIEEKP ESEPAKRNSG ETYITVSSED DDEDGYNPYT L
|
| Detection Method: | |
| Confidence: | 91.0 |
| Match: | 1f5aA_ |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.13067754075302 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 2.12021443504286 | bayes_pls_golite062009 |
| binding | 2.05218701326405 | bayes_pls_golite062009 |
| RNA binding | 1.77578561123536 | bayes_pls_golite062009 |
| polynucleotide adenylyltransferase activity | 1.54779952898232 | bayes_pls_golite062009 |
| DNA binding | 1.5286843489086 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.08480919674453 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.773960702302769 | bayes_pls_golite062009 |
| catalytic activity | 0.75232920999699 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.739770356253601 | bayes_pls_golite062009 |
| transferase activity | 0.432029324907561 | bayes_pls_golite062009 |
| transcription factor binding | 0.227209369499116 | bayes_pls_golite062009 |
| protein binding | 0.0181192131028179 | bayes_pls_golite062009 |
|
Region A: Residues: [193-303] |
1 11 21 31 41 51
| | | | | |
1 SREEIEIRNQ TISTIREAVK QLWPDADLHV FGSYSTDLYL PGSDIDCVVT SELGGKESRN 60
61 NLYSLASHLK KKNLATEVEV VAKARVPIIK FVEPHSGIHI DVSFERTNGI E
|
| Detection Method: | |
| Confidence: | 91.0 |
| Match: | 1f5aA_ |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
